ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4349913	coatomer subunit beta-1-like
osa-r.6	4349913	coatomer subunit beta-1-like
osa-m.8	4349913	coatomer subunit beta-1-like
osa-e.1	4349913	coatomer subunit beta-1-like
osa-u.5	4326915	coatomer subunit beta-2
zma-u.5	100384840	Retrovirus-related Pol polyprotein LINE-1
zma-u.5	100383446	Coatomer subunit beta
zma-u.5	100384159	Coatomer subunit beta-1
ath-u.5	AT4G31480	Coatomer, beta subunit
ath-u.5	AT4G31490	Coatomer, beta subunit
gma-u.5	100814417	coatomer subunit beta-1
gma-u.5	100802469	coatomer subunit beta-1
sly-u.5	101265667	coatomer subunit beta-1-like
sly-u.5	101248531	coatomer subunit beta-1
vvi-u.5	100242255	coatomer subunit beta-1-like
vvi-u.5	100255342	coatomer subunit beta-1
ppo-u.5	7476239	coatomer subunit beta-1
ppo-u.5	18100737	coatomer subunit beta-2
mtr-u.5	25491248	coatomer subunit beta-1

Top 50 coexpressed genes to 4349913 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4349913 (osa-u.5 coexpression data)

CoexMap"4349913"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(30 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(97 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(271 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat	(21 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(5212 genes)	IEA

GO MF

GO:0005198 [list] [network] structural molecule activity

(469 genes)

IEA

Protein

NP_001410099.1 [sequence] [blastp]

Subcellular
localization
wolf

E.R. 3, plas 2, E.R._vacu 2, cyto_E.R. 2

(predict for NP_001410099.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001410099.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4349913	osa-r.6 for 4349913	osa-m.8 for 4349913	osa-e.1 for 4349913	osa-u.5 for 4326915	zma-u.5 for 100384840	zma-u.5 for 100383446	zma-u.5 for 100384159	ath-u.5 for AT4G31480	ath-u.5 for AT4G31490	gma-u.5 for 100814417	gma-u.5 for 100802469	sly-u.5 for 101265667	sly-u.5 for 101248531	vvi-u.5 for 100242255	vvi-u.5 for 100255342	ppo-u.5 for 7476239	ppo-u.5 for 18100737	mtr-u.5 for 25491248

Ortholog

Ortholog ID: 3128

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

coatomer subunit beta-2

coatomer subunit beta-1-like

coatomer subunit beta-1

coatomer subunit beta-2

coatomer subunit beta-2-like

coatomer subunit beta-2

Retrovirus-related Pol polyprotein LINE-1

Coatomer subunit beta-1

coatomer subunit beta-2

Coatomer, beta subunit

coatomer subunit beta-1

coatomer subunit beta-1-like

coatomer subunit beta-1

coatomer subunit beta-1-like

coatomer subunit beta-1

coatomer subunit beta-2

coatomer subunit beta-1

coatomer subunit beta-1-like

coatomer subunit beta-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	6
tae04144	Endocytosis	4
tae00513	Various types of N-glycan biosynthesis	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04142	Lysosome	2
hvu04144	Endocytosis	2
hvu05100	Bacterial invasion of epithelial cells	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	4
hvu01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi03050	Proteasome	2
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	3
ath04144	Endocytosis	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04141	Protein processing in endoplasmic reticulum	2
ath04142	Lysosome	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3
gma04142	Lysosome	2
gma04144	Endocytosis	2
gma05100	Bacterial invasion of epithelial cells	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma04141	Protein processing in endoplasmic reticulum	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	3
sly04141	Protein processing in endoplasmic reticulum	3
sly04144	Endocytosis	3
sly00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	4
sly05100	Bacterial invasion of epithelial cells	4
sly04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	3
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	3
ppo04144	Endocytosis	3
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	4
ghi04144	Endocytosis	3
ghi05100	Bacterial invasion of epithelial cells	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot04814	Motor proteins	2
sot04142	Lysosome	2
sot04144	Endocytosis	2
sot05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot00510	N-Glycan biosynthesis	3
sot04142	Lysosome	3
sot04144	Endocytosis	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04148	Efferocytosis	2
nta00051	Fructose and mannose metabolism	2
nta00541	Biosynthesis of various nucleotide sugars	2
nta01250	Biosynthesis of nucleotide sugars	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	3
nta00513	Various types of N-glycan biosynthesis	3
nta04141	Protein processing in endoplasmic reticulum	3
nta04148	Efferocytosis	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	5
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

4326915

4349913

123070478

123069735

123443546

123443550

100839296

100834189

100384840

100384159

8155702

8054681

829275

829276

100814417

100802469

101265667

101248531

103851803

103862059

100242255

100255342

18100737

7476239

25491248

107937929

107901630

106410259

106390047

102585088

102580399

102624517

107763805

107792487

5726816

The preparation time of this page was 0.1 [sec].


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	2	2	2	2	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4349913 (osa-u.5 coexpression data)

Top 50 enrichment test to 4349913 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**