ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7476239	coatomer subunit beta-1
ppo-r.4	7476239	coatomer subunit beta-1
ppo-u.5	18100737	coatomer subunit beta-2
gma-u.5	100802469	coatomer subunit beta-1
gma-u.5	100814417	coatomer subunit beta-1
mtr-u.5	25491248	coatomer subunit beta-1
ath-u.5	AT4G31480	Coatomer, beta subunit
ath-u.5	AT4G31490	Coatomer, beta subunit
vvi-u.5	100255342	coatomer subunit beta-1
vvi-u.5	100242255	coatomer subunit beta-1-like
sly-u.5	101248531	coatomer subunit beta-1
sly-u.5	101265667	coatomer subunit beta-1-like
osa-u.5	4349913	coatomer subunit beta-1-like
osa-u.5	4326915	coatomer subunit beta-2
zma-u.5	100384840	Retrovirus-related Pol polyprotein LINE-1
zma-u.5	100383446	Coatomer subunit beta
zma-u.5	100384159	Coatomer subunit beta-1

Top 50 coexpressed genes to 7476239 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7476239 (ppo-u.5 coexpression data)

CoexMap"7476239"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(31 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(109 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(350 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat	(16 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(6111 genes)	IEA

GO MF

GO:0005198 [list] [network] structural molecule activity

(596 genes)

IEA

Protein

XP_002324951.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 3, cyto 3, cyto_nucl 3, plas 1, vacu 1, cysk_nucl 1, cyto_pero 1

(predict for XP_002324951.3)

Subcellular
localization
TargetP

other 9

(predict for XP_002324951.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7476239 .	ppo-r.4 for 7476239 .	ppo-u.5 for 18100737 .	gma-u.5 for 100802469 .	gma-u.5 for 100814417 .	mtr-u.5 for 25491248 .	ath-u.5 for AT4G31480 .	ath-u.5 for AT4G31490 .	vvi-u.5 for 100255342 .	vvi-u.5 for 100242255 .	sly-u.5 for 101248531 .	sly-u.5 for 101265667 .	osa-u.5 for 4349913 .	osa-u.5 for 4326915 .	zma-u.5 for 100384840 .	zma-u.5 for 100383446 .	zma-u.5 for 100384159 .

Ortholog

Ortholog ID: 3128

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

Function^*

Coatomer, beta subunit

coatomer subunit beta-1

coatomer subunit beta-1-like

coatomer subunit beta-1

coatomer subunit beta-2

coatomer subunit beta-1-like

Retrovirus-related Pol polyprotein LINE-1

Coatomer subunit beta-1

coatomer subunit beta-1

coatomer subunit beta-1-like

coatomer subunit beta-1

coatomer subunit beta-2

coatomer subunit beta-1

coatomer subunit beta-2

coatomer subunit beta-2-like

coatomer subunit beta-1

coatomer subunit beta-1-like

uncharacterized protein

coatomer subunit beta-2

coatomer subunit beta-1-like

coatomer subunit beta-1

coatomer subunit beta-2

coatomer subunit beta-1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	3
ath04144	Endocytosis	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04141	Protein processing in endoplasmic reticulum	2
ath04142	Lysosome	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3
gma04142	Lysosome	2
gma04144	Endocytosis	2
gma05100	Bacterial invasion of epithelial cells	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma04141	Protein processing in endoplasmic reticulum	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	3
sly04141	Protein processing in endoplasmic reticulum	3
sly04144	Endocytosis	3
sly00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	4
sly05100	Bacterial invasion of epithelial cells	4
sly04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	3
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	3
ppo04144	Endocytosis	3
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	6
tae04144	Endocytosis	4
tae00513	Various types of N-glycan biosynthesis	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04142	Lysosome	2
hvu04144	Endocytosis	2
hvu05100	Bacterial invasion of epithelial cells	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	4
hvu01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	4
ghi04144	Endocytosis	3
ghi05100	Bacterial invasion of epithelial cells	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	5
cre04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi03050	Proteasome	2
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot04814	Motor proteins	2
sot04142	Lysosome	2
sot04144	Endocytosis	2
sot05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot00510	N-Glycan biosynthesis	3
sot04142	Lysosome	3
sot04144	Endocytosis	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04148	Efferocytosis	2
nta00051	Fructose and mannose metabolism	2
nta00541	Biosynthesis of various nucleotide sugars	2
nta01250	Biosynthesis of nucleotide sugars	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	3
nta00513	Various types of N-glycan biosynthesis	3
nta04141	Protein processing in endoplasmic reticulum	3
nta04148	Efferocytosis	2
nta04142	Lysosome	2

Expression

Expression pattern

Entrez Gene ID^*

829275

829276

100814417

100802469

101265667

101248531

4326915

4349913

100384840

100384159

103851803

103862059

100242255

100255342

18100737

7476239

25491248

123070478

123069735

123443546

123443550

107937929

107901630

106410259

106390047

5726816

8155702

8054681

102585088

102580399

102624517

100839296

100834189

107763805

107792487

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	3	2	1	2	2	2	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7476239 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7476239 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**