ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4350698	adagio-like protein 3
osa-r.6	4350698	adagio-like protein 3
osa-m.8	4350698	adagio-like protein 3
osa-e.1	4350698	adagio-like protein 3
osa-u.5	4328313	putative adagio-like protein 2
osa-u.5	4341923	adagio-like protein 1
zma-u.5	103626626	putative adagio-like protein 2
zma-u.5	103626364	adagio-like protein 1
zma-u.5	103629610	adagio-like protein 1
ath-u.5	LKP2	LOV KELCH protein 2
ath-u.5	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-u.5	FKF1	flavin-binding, kelch repeat, f box 1
gma-u.5	ZTL2	clock-associated PAS protein ZEITLUPE 2
gma-u.5	ZTL1	PAS protein ZEITLUPE 1
gma-u.5	ZTL	adagio protein 1
sly-u.5	101262932	adagio protein 1
sly-u.5	101256908	adagio protein 3
vvi-u.5	100249144	adagio protein 1
vvi-u.5	100255972	adagio protein 3
vvi-u.5	100244508	adagio protein 1
ppo-u.5	18100482	adagio protein 1
ppo-u.5	7488958	adagio protein 1
ppo-u.5	7482913	adagio protein 3
mtr-u.5	11417024	adagio protein 3
mtr-u.5	11445386	adagio protein 1

Top 50 coexpressed genes to 4350698 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4350698 (osa-u.5 coexpression data)

CoexMap"4350698"

[Cytoscape]

Annotation

functional annotation

KEGG

osa04712 [list] [network] Circadian rhythm - plant (47 genes)

GO BP

GO:0007623 [list] [network] circadian rhythm	(11 genes)	IEA
GO:0009637 [list] [network] response to blue light	(11 genes)	IEA

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex	(46 genes)	IEA
GO:0005829 [list] [network] cytosol	(929 genes)	IEA
GO:0005634 [list] [network] nucleus	(3003 genes)	IEA

GO MF

GO:0005515 [list] [network] protein binding

(4590 genes)

IEA

Protein

NP_001410347.1 [sequence] [blastp]
XP_015617057.2 [sequence] [blastp]
XP_066161157.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto_nucl 4, nucl 3, cyto 3, plas 1, chlo 1, mito 1, chlo_mito 1, golg_plas 1, E.R._vacu 1, cysk_plas 1	(predict for NP_001410347.1)
cyto 4, chlo 2, cyto_nucl 2, mito 1, pero 1	(predict for XP_015617057.2)
nucl 7, chlo 1, cyto 1, pero 1, chlo_mito 1, cyto_pero 1	(predict for XP_066161157.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001410347.1)
other 9	(predict for XP_015617057.2)
other 8	(predict for XP_066161157.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4350698	osa-r.6 for 4350698	osa-m.8 for 4350698	osa-e.1 for 4350698	osa-u.5 for 4328313	osa-u.5 for 4341923	zma-u.5 for 103626626	zma-u.5 for 103626364	zma-u.5 for 103629610	ath-u.5 for LKP2	ath-u.5 for ZTL	ath-u.5 for FKF1	gma-u.5 for ZTL2	gma-u.5 for ZTL1	gma-u.5 for ZTL	sly-u.5 for 101262932	sly-u.5 for 101256908	vvi-u.5 for 100249144	vvi-u.5 for 100255972	vvi-u.5 for 100244508	ppo-u.5 for 18100482	ppo-u.5 for 7488958	ppo-u.5 for 7482913	mtr-u.5 for 11417024	mtr-u.5 for 11445386

Ortholog

Ortholog ID: 2012

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

ZTL

LKP2

ZTL

ZTL1

Function^*

putative adagio-like protein 2

adagio-like protein 1

adagio-like protein 3

putative adagio-like protein 2

adagio-like protein 3

adagio-like protein 1

uncharacterized LOC100383277

adagio-like protein 1

putative adagio-like protein 2

Galactose oxidase/kelch repeat superfamily protein

LOV KELCH protein 2

adagio protein 1

PAS protein ZEITLUPE 1

adagio protein 1

adagio protein 3

adagio protein 2

adagio protein 1

adagio protein 3

adagio protein 1

adagio protein 3

adagio protein 1

adagio protein 3

adagio protein 2

adagio protein 2-like

adagio protein 3

adagio protein 1-like

adagio protein 3

adagio protein 1

adagio protein 3

adagio protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	5
tae00061	Fatty acid biosynthesis	3
tae01212	Fatty acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	3
zma03013	Nucleocytoplasmic transport	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2
sbi04016	MAPK signaling pathway - plant	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	3
sbi01240	Biosynthesis of cofactors	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00310	Lysine degradation	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta00970	Aminoacyl-tRNA biosynthesis	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

Expression

Expression pattern

Entrez Gene ID^*

4328313

4341923

123168584

100127072

123406339

123448527

100845844

100832311

103629610

100383277

8065120

8074643

835842

816408

100802828

100301887

101262932

101256908

103828354

103828355

100244508

100249144

18100482

7482913

11445386

11417024

107907349

107918113

106435341

106357632

102593553

102583269

102630709

102613944

107774540

107786372

The preparation time of this page was 0.1 [sec].


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	3	3	3	2	3	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4350698 (osa-u.5 coexpression data)

Top 50 enrichment test to 4350698 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**