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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542158   thylakoid assembly 8 
 zma-r.6   542158   thylakoid assembly 8 
 zma-m.5   542158   thylakoid assembly 8 
 sbi-r.1   110434201   pentatricopeptide repeat-containing protein At3g46870 
 osa-u.5   4324089   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 tae-r.2   123058081   protein THYLAKOID ASSEMBLY 8, chloroplastic-like 
 tae-r.2   123065098   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 tae-r.2   123074243   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 hvu-r.1   123439584   protein THYLAKOID ASSEMBLY 8, chloroplastic-like 
 bdi-r.1   100823749   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 ath-u.5   EMB3123   PPR containing protein 
 gma-u.5   100799612   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 gma-u.5   100788379   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 sly-u.5   101267975   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 bra-r.6   103863790   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 vvi-u.5   100251441   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 ppo-u.5   7483539   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 mtr-u.5   11435008   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 ghi-r.1   107914440   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 ghi-r.1   107897493   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 bna-r.1   106429457   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 bna-r.1   125607898   protein THYLAKOID ASSEMBLY 8, chloroplastic-like 
 sot-r.1   107059800   uncharacterized LOC107059800 
 cit-r.1   102622003   hypothetical protein 
 nta-r.1   107790898   protein THYLAKOID ASSEMBLY 8, chloroplastic-like 
 nta-r.1   107782999   protein THYLAKOID ASSEMBLY 8, chloroplastic 

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Top 50 coexpressed genes to 542158 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542158 (zma-u.5 coexpression data)

CoexMap"542158"


zmaLOC542158 | Entrez gene ID : 542158      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 3 1 1 1 2 1 1 1 1 1 2 2 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000373 [list] [network] Group II intron splicing  (7 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (67 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein NP_001105250.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001105250.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001105250.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542158
zma-r.6
for
542158
zma-m.5
for
542158
sbi-r.1
for
110434201
osa-u.5
for
4324089
tae-r.2
for
123058081
tae-r.2
for
123065098
tae-r.2
for
123074243
hvu-r.1
for
123439584
bdi-r.1
for
100823749
ath-u.5
for
EMB3123
gma-u.5
for
100799612
gma-u.5
for
100788379
sly-u.5
for
101267975
bra-r.6
for
103863790
vvi-u.5
for
100251441
ppo-u.5
for
7483539
mtr-u.5
for
11435008
ghi-r.1
for
107914440
ghi-r.1
for
107897493
bna-r.1
for
106429457
bna-r.1
for
125607898
sot-r.1
for
107059800
cit-r.1
for
102622003
nta-r.1
for
107790898
nta-r.1
for
107782999


Ortholog ID: 9515
Species zma sbi osa tae tae tae hvu bdi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC542158 LOC110434201 LOC4324089 LOC123058081 LOC123065098 LOC123077667 LOC123439584 LOC100823749 EMB3123 LOC100799612 LOC100788379 LOC101267975 LOC103863790 LOC100251441 LOC7483539 LOC11435008 LOC107914440 LOC107897493 LOC106429457 LOC125607898 LOC107059800 LOC102622003 LOC107790898 LOC107782999
Function* thylakoid assembly 8 pentatricopeptide repeat-containing protein At3g46870 protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic-like protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic-like protein THYLAKOID ASSEMBLY 8, chloroplastic PPR containing protein protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic-like uncharacterized LOC107059800 hypothetical protein protein THYLAKOID ASSEMBLY 8, chloroplastic-like protein THYLAKOID ASSEMBLY 8, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit00071 Fatty acid degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542158 110434201 4324089 123058081 123065098 123077667 123439584 100823749 822397 100799612 100788379 101267975 103863790 100251441 7483539 11435008 107914440 107897493 106429457 125607898 107059800 102622003 107790898 107782999
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