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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g511700v5   uncharacterized protein 
 ath-u.5   GPS1   geranyl diphosphate synthase 1 
 gma-u.5   100792725   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 gma-u.5   100780374   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 sly-u.5   GPS   geranyl pyrophosphate synthase 
 osa-u.5   4341844   solanesyl-diphosphate synthase 1, mitochondrial-like 
 zma-u.5   103626280   solanesyl-diphosphate synthase 1, mitochondrial 
 zma-u.5   100279314   decaprenyl-diphosphate synthase subunit 1 
 bra-r.6   103857539   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 vvi-u.5   100232946   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 ppo-u.5   7489405   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 ppo-u.5   7479520   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 mtr-u.5   25493517   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 tae-r.2   123165008   solanesyl-diphosphate synthase 1, mitochondrial 
 tae-r.2   123156930   solanesyl-diphosphate synthase 1, mitochondrial 
 tae-r.2   123149070   solanesyl-diphosphate synthase 1, mitochondrial 
 hvu-r.1   123410284   solanesyl-diphosphate synthase 1, mitochondrial 
 ghi-r.1   107913810   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 ghi-r.1   107937512   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 ghi-r.1   107953314   solanesyl-diphosphate synthase 1, mitochondrial 
 bna-r.1   106447487   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 bna-r.1   106437826   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 bna-r.1   125609352   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like 
 sbi-r.1   8061614   solanesyl-diphosphate synthase 1, mitochondrial 
 sot-r.1   102588989   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 cit-r.1   102624826   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like 
 cit-r.1   102625110   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 
 bdi-r.1   100837237   solanesyl-diphosphate synthase 1, mitochondrial 
 bdi-r.1   100832081   solanesyl-diphosphate synthase 1, mitochondrial 
 nta-r.1   107781844   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like 
 nta-r.1   107776134   solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to CHLRE_12g511700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g511700v5 (cre-r.1 coexpression data)

CoexMap"5716593"


creCHLRE_12g511700v5 | Entrez gene ID : 5716593      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 2 1 1 2 1 3 1 3 3 1 1 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00900 [list] [network] Terpenoid backbone biosynthesis (22 genes)
GO BP
GO:0006744 [list] [network] ubiquinone biosynthetic process  (10 genes)  IEA  
GO:0008299 [list] [network] isoprenoid biosynthetic process  (31 genes)  IEA  
GO CC
GO:1990234 [list] [network] transferase complex  (374 genes)  IEA  
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (16 genes)  IEA  
Protein XP_001691069.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2  (predict for XP_001691069.1)
Subcellular
localization
TargetP
scret 2  (predict for XP_001691069.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g511700v5
ath-u.5
for
GPS1
gma-u.5
for
100792725
gma-u.5
for
100780374
sly-u.5
for
GPS
osa-u.5
for
4341844
zma-u.5
for
103626280
zma-u.5
for
100279314
bra-r.6
for
103857539
vvi-u.5
for
100232946
ppo-u.5
for
7489405
ppo-u.5
for
7479520
mtr-u.5
for
25493517
tae-r.2
for
123165008
tae-r.2
for
123156930
tae-r.2
for
123149070
hvu-r.1
for
123410284
ghi-r.1
for
107913810
ghi-r.1
for
107937512
ghi-r.1
for
107953314
bna-r.1
for
106447487
bna-r.1
for
106437826
bna-r.1
for
125609352
sbi-r.1
for
8061614
sot-r.1
for
102588989
cit-r.1
for
102624826
cit-r.1
for
102625110
bdi-r.1
for
100837237
bdi-r.1
for
100832081
nta-r.1
for
107781844
nta-r.1
for
107776134


Ortholog ID: 5963
Species cre ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot cit cit bdi bdi nta nta
Symbol CHLRE_12g511700v5 GPS1 LOC100792725 LOC100780374 GPS LOC4341844 LOC103626280 LOC100279314 LOC103857539 LOC100232946 LOC7489405 LOC7479520 LOC25493517 LOC123165008 LOC123156930 LOC123149070 LOC123410284 LOC107913810 LOC107937512 LOC107953314 LOC106447487 LOC125609352 LOC106396189 LOC8061614 LOC102588989 LOC102624826 LOC102625110 LOC100837237 LOC100832081 LOC107781844 LOC107776134
Function* uncharacterized protein geranyl diphosphate synthase 1 solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial geranyl pyrophosphate synthase solanesyl-diphosphate synthase 1, mitochondrial-like solanesyl-diphosphate synthase 1, mitochondrial decaprenyl-diphosphate synthase subunit 1 solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like solanesyl diphosphate synthase 3, chloroplastic/mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl-diphosphate synthase 1, mitochondrial solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01232 Nucleotide metabolism 2
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00280 Valine, leucine and isoleucine degradation 2
gma01212 Fatty acid metabolism 2
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 6
osa00020 Citrate cycle (TCA cycle) 5
osa01210 2-Oxocarboxylic acid metabolism 5
osa01230 Biosynthesis of amino acids 4
osa00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00410 beta-Alanine metabolism 2
vvi00640 Propanoate metabolism 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00051 Fructose and mannose metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi01230 Biosynthesis of amino acids 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00620 Pyruvate metabolism 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716593 818028 100792725 100780374 778311 4341844 103626280 100279314 103857539 100232946 7489405 7479520 25493517 123165008 123156930 123149070 123410284 107913810 107937512 107953314 106447487 125609352 106396189 8061614 102588989 102624826 102625110 100837237 100832081 107781844 107776134
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