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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_08g385850v5   uncharacterized protein 
 ath-u.5   CDKC;1   cyclin-dependent kinase C;1 
 ath-u.5   CDKC2   cyclin dependent kinase group C2 
 gma-u.5   100793565   cyclin-dependent kinase C-2 
 gma-u.5   100780860   cyclin-dependent kinase C-2 
 gma-u.5   100795971   cyclin-dependent kinase C-2 
 sly-u.5   101268768   cyclin-dependent kinase C-2 
 sly-u.5   CDKC   cyclin dependent kinase C 
 osa-u.5   4338674   cyclin-dependent kinase C-1-like 
 zma-u.5   103625921   cyclin-dependent kinase C-2 
 zma-u.5   100279243   putative cyclin-dependent protein kinase C family protein 
 vvi-u.5   100263383   cyclin-dependent kinase C-2 
 vvi-u.5   100854820   cyclin-dependent kinase C-1 
 ppo-u.5   7479619   cyclin-dependent kinase C-2 
 ppo-u.5   7493193   cyclin-dependent kinase C-2 
 mtr-u.5   25488855   cyclin-dependent kinase C-2 
 mtr-u.5   25488867   cyclin-dependent kinase C-2 

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Top 50 coexpressed genes to CHLRE_08g385850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_08g385850v5 (cre-r.1 coexpression data)

CoexMap"5719783"


creCHLRE_08g385850v5 | Entrez gene ID : 5719783      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 2 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II  (6 genes)  IEA  
GO:0006468 [list] [network] protein phosphorylation  (662 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (27 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0008353 [list] [network] RNA polymerase II CTD heptapeptide repeat kinase activity  (4 genes)  IEA  
GO:0004693 [list] [network] cyclin-dependent protein serine/threonine kinase activity  (13 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042922368.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 2,  nucl 1,  cyto_pero 1  (predict for XP_042922368.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042922368.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_08g385850v5

.
ath-u.5
for
CDKC;1

.
ath-u.5
for
CDKC2

.
gma-u.5
for
100793565

.
gma-u.5
for
100780860

.
gma-u.5
for
100795971

.
sly-u.5
for
101268768

.
sly-u.5
for
CDKC

.
osa-u.5
for
4338674

.
zma-u.5
for
103625921

.
zma-u.5
for
100279243

.
vvi-u.5
for
100263383

.
vvi-u.5
for
100854820

.
ppo-u.5
for
7479619

.
ppo-u.5
for
7493193

.
mtr-u.5
for
25488855

.
mtr-u.5
for
25488867

.


Ortholog ID: 4123
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol CDKC2 CDKC;1 LOC100780860 LOC100795971 LOC101268768 CDKC LOC4338674 LOC103625921 LOC100279243 LOC103855268 LOC103832231 LOC100854820 LOC100263383 LOC7479619 LOC7493193 LOC25488855 LOC123181876 LOC123072591 LOC123439690 LOC107900711 LOC107930109 LOC106382849 LOC106382886 CHLRE_08g385850v5 LOC8076846 LOC102582666 LOC102591407 LOC102621414 LOC100836145 LOC104584626 LOC107760785 LOC107804852
Function* cyclin dependent kinase group C2 cyclin-dependent kinase C;1 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin dependent kinase C cyclin-dependent kinase C-1-like cyclin-dependent kinase C-2 putative cyclin-dependent protein kinase C family protein cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-1 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 cyclin-dependent kinase C-2 uncharacterized protein cyclin-dependent kinase C-2 cyclin-dependent kinase C-1-like cyclin-dependent kinase C-2-like cyclin-dependent kinase C-1 cyclin-dependent kinase C-2 uncharacterized LOC104584626 cyclin-dependent kinase C-2 cyclin-dependent kinase C-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath00970 Aminoacyl-tRNA biosynthesis 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly03010 Ribosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03440 Homologous recombination 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 6
zma03015 mRNA surveillance pathway 3
zma03040 Spliceosome 2
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi04141 Protein processing in endoplasmic reticulum 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr03040 Spliceosome 4
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00543 Exopolysaccharide biosynthesis 3
tae00920 Sulfur metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 4
bna03040 Spliceosome 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 4
bna03040 Spliceosome 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836620 830891 100780860 100795971 101268768 544242 4338674 103625921 100279243 103855268 103832231 100854820 100263383 7479619 7493193 25488855 123181876 123072591 123439690 107900711 107930109 106382849 106382886 5719783 8076846 102582666 102591407 102621414 100836145 104584626 107760785 107804852
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