ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g529600v5	uncharacterized protein
ath-u.5	NRPA1	nuclear RNA polymerase A1
gma-u.5	100779532	DNA-directed RNA polymerase I subunit 1
sly-u.5	101260591	DNA-directed RNA polymerase I subunit 1
osa-u.5	9270399	DNA-directed RNA polymerase I subunit 1
zma-u.5	109942860	DNA-directed RNA polymerase I subunit 1
zma-u.5	100279825	DNA-directed RNA polymerase I subunit 1
bra-r.6	103841672	DNA-directed RNA polymerase I subunit 1
bra-r.6	103830117	DNA-directed RNA polymerase I subunit 1
vvi-u.5	100250406	DNA-directed RNA polymerase I subunit 1
ppo-u.5	18099840	DNA-directed RNA polymerase I subunit 1
mtr-u.5	11444522	DNA-directed RNA polymerase I subunit 1
tae-r.2	123087765	DNA-directed RNA polymerase I subunit 1
tae-r.2	123114167	DNA-directed RNA polymerase I subunit 1
tae-r.2	123123657	DNA-directed RNA polymerase I subunit 1
hvu-r.1	123394932	DNA-directed RNA polymerase I subunit 1
ghi-r.1	107950708	DNA-directed RNA polymerase I subunit 1
ghi-r.1	107951811	DNA-directed RNA polymerase I subunit 1
bna-r.1	106356841	DNA-directed RNA polymerase I subunit 1-like
bna-r.1	106376431	DNA-directed RNA polymerase I subunit 1-like
bna-r.1	106368196	DNA-directed RNA polymerase I subunit 1
sbi-r.1	8061093	DNA-directed RNA polymerase I subunit 1
sot-r.1	102592134	DNA-directed RNA polymerase I subunit 1
cit-r.1	102625708	DNA-directed RNA polymerase I subunit 1
bdi-r.1	100821444	DNA-directed RNA polymerase I subunit 1
nta-r.1	107816097	DNA-directed RNA polymerase I subunit 1
nta-r.1	107806552	DNA-directed RNA polymerase I subunit 1

Annotation

functional annotation

KEGG

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(95 genes)

IEA

GO CC

GO:0005736 [list] [network] RNA polymerase I complex

(12 genes)

IEA

GO MF

GO:0003899 [list] [network] DNA-directed RNA polymerase activity	(16 genes)	IEA
GO:0003677 [list] [network] DNA binding	(670 genes)	IEA

Protein

XP_042918637.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, mito 3, chlo_mito 3, pero 2

(predict for XP_042918637.1)

Subcellular
localization
TargetP

other 7

(predict for XP_042918637.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g529600v5	ath-u.5 for NRPA1	gma-u.5 for 100779532	sly-u.5 for 101260591	osa-u.5 for 9270399	zma-u.5 for 109942860	zma-u.5 for 100279825	bra-r.6 for 103841672	bra-r.6 for 103830117	vvi-u.5 for 100250406	ppo-u.5 for 18099840	mtr-u.5 for 11444522	tae-r.2 for 123087765	tae-r.2 for 123114167	tae-r.2 for 123123657	hvu-r.1 for 123394932	ghi-r.1 for 107950708	ghi-r.1 for 107951811	bna-r.1 for 106356841	bna-r.1 for 106376431	bna-r.1 for 106368196	sbi-r.1 for 8061093	sot-r.1 for 102592134	cit-r.1 for 102625708	bdi-r.1 for 100821444	nta-r.1 for 107816097	nta-r.1 for 107806552

Ortholog

Ortholog ID: 8989

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

NRPA1

Function^*

uncharacterized protein

nuclear RNA polymerase A1

DNA-directed RNA polymerase I subunit 1

DNA-directed RNA polymerase I subunit 1-like

DNA-directed RNA polymerase I subunit 1

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	8
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5
osa03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03018	RNA degradation	4
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	7
tae03018	RNA degradation	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	8
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	6
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03020	RNA polymerase	2
sot00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	7
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

5722421

824935

100779532

101260591

9270399

109942860

100279825

103841672

103830117

100250406

18099840

11444522

123087765

123114167

123123657

123394932

107950708

107951811

106356841

106376431

106368196

8061093

102592134

102625708

100821444

107816097

107806552

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g529600v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g529600v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	2	2	1	1	1	3	1	2	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g529600v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g529600v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**