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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g520250v5   uncharacterized protein 
 ath-u.5   ELF7   hydroxyproline-rich glycoprotein family protein 
 gma-u.5   100800148   protein PAF1 homolog 
 gma-u.5   100797526   protein PAF1 homolog 
 sly-u.5   101254885   protein PAF1 homolog 
 osa-u.5   4344699   protein PAF1 homolog 
 zma-u.5   100279273   uncharacterized LOC100279273 
 zma-u.5   100273854   uncharacterized LOC100273854 
 vvi-u.5   100254912   protein PAF1 homolog 
 ppo-u.5   7470582   protein PAF1 homolog 
 ppo-u.5   7461933   protein PAF1 homolog 
 mtr-u.5   11431121   protein PAF1 homolog 

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Top 50 coexpressed genes to CHLRE_12g520250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g520250v5 (cre-r.1 coexpression data)

CoexMap"5722595"


creCHLRE_12g520250v5 | Entrez gene ID : 5722595    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (15 genes)  IEA  
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (6 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (10 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (81 genes)  IEA  
Protein XP_042918465.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  mito 3,  cyto 2,  chlo_mito 2  (predict for XP_042918465.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_042918465.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g520250v5

.
ath-u.5
for
ELF7

.
gma-u.5
for
100800148

.
gma-u.5
for
100797526

.
sly-u.5
for
101254885

.
osa-u.5
for
4344699

.
zma-u.5
for
100279273

.
zma-u.5
for
100273854

.
vvi-u.5
for
100254912

.
ppo-u.5
for
7470582

.
ppo-u.5
for
7461933

.
mtr-u.5
for
11431121

.


Ortholog ID: 7467
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol ELF7 LOC100797526 LOC100800148 LOC101254885 LOC4344699 LOC100273854 LOC100279273 LOC103847442 LOC100254912 LOC7461933 LOC7470582 LOC11431121 LOC123155727 LOC123068194 LOC123413084 LOC123442375 LOC107950655 LOC107889105 LOC106384513 LOC106372591 CHLRE_12g520250v5 LOC8069621 LOC102605366 LOC102610204 LOC100838919 LOC107768468 LOC107826626
Function* hydroxyproline-rich glycoprotein family protein protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog uncharacterized LOC100273854 uncharacterized LOC100279273 protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog uncharacterized protein protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00510 N-Glycan biosynthesis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre03040 Spliceosome 3
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844312 100797526 100800148 101254885 4344699 100273854 100279273 103847442 100254912 7461933 7470582 11431121 123155727 123068194 123413084 123442375 107950655 107889105 106384513 106372591 5722595 8069621 102605366 102610204 100838919 107768468 107826626
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