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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8069621   protein PAF1 homolog 
 zma-u.5   100279273   uncharacterized LOC100279273 
 zma-u.5   100273854   uncharacterized LOC100273854 
 osa-u.5   4344699   protein PAF1 homolog 
 tae-r.2   123059779   protein PAF1 homolog 
 tae-r.2   123068194   protein PAF1 homolog 
 tae-r.2   123147263   protein PAF1 homolog 
 hvu-r.1   123413084   protein PAF1 homolog 
 hvu-r.1   123442375   protein PAF1 homolog 
 bdi-r.1   100838919   protein PAF1 homolog 
 ath-u.5   ELF7   hydroxyproline-rich glycoprotein family protein 
 gma-u.5   100800148   protein PAF1 homolog 
 gma-u.5   100797526   protein PAF1 homolog 
 sly-u.5   101254885   protein PAF1 homolog 
 bra-r.6   103847442   protein PAF1 homolog 
 vvi-u.5   100254912   protein PAF1 homolog 
 ppo-u.5   7470582   protein PAF1 homolog 
 ppo-u.5   7461933   protein PAF1 homolog 
 mtr-u.5   11431121   protein PAF1 homolog 
 ghi-r.1   107889105   protein PAF1 homolog 
 ghi-r.1   107891711   protein PAF1 homolog 
 ghi-r.1   107950655   protein PAF1 homolog 
 bna-r.1   106372591   protein PAF1 homolog 
 bna-r.1   106384513   protein PAF1 homolog 
 sot-r.1   102605366   protein PAF1 homolog 
 cit-r.1   102610204   protein PAF1 homolog 
 nta-r.1   107768468   protein PAF1 homolog 
 nta-r.1   107826626   protein PAF1 homolog 
 cre-r.1   CHLRE_12g520250v5   uncharacterized protein 

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Top 50 coexpressed genes to 8069621 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8069621 (sbi-r.1 coexpression data)

CoexMap"8069621"


sbiLOC8069621 | Entrez gene ID : 8069621      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 2 1 3 2 1 1 2 1 1 1 2 1 3 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (22 genes)  IEA  
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (8 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (18 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (124 genes)  IEA  
Protein XP_002445079.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  pero 4,  chlo 2,  cyto_nucl 2,  cyto_pero 2  (predict for XP_002445079.1)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for XP_002445079.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8069621
zma-u.5
for
100279273
zma-u.5
for
100273854
osa-u.5
for
4344699
tae-r.2
for
123059779
tae-r.2
for
123068194
tae-r.2
for
123147263
hvu-r.1
for
123413084
hvu-r.1
for
123442375
bdi-r.1
for
100838919
ath-u.5
for
ELF7
gma-u.5
for
100800148
gma-u.5
for
100797526
sly-u.5
for
101254885
bra-r.6
for
103847442
vvi-u.5
for
100254912
ppo-u.5
for
7470582
ppo-u.5
for
7461933
mtr-u.5
for
11431121
ghi-r.1
for
107889105
ghi-r.1
for
107891711
ghi-r.1
for
107950655
bna-r.1
for
106372591
bna-r.1
for
106384513
sot-r.1
for
102605366
cit-r.1
for
102610204
nta-r.1
for
107768468
nta-r.1
for
107826626
cre-r.1
for
CHLRE_12g520250v5


Ortholog ID: 7467
Species sbi zma zma osa tae tae tae hvu hvu bdi ath gma gma sly bra vvi ppo ppo mtr ghi ghi ghi bna bna sot cit nta nta cre
Symbol LOC8069621 LOC100279273 LOC100273854 LOC4344699 LOC123059779 LOC123068194 LOC123155727 LOC123413084 LOC123442375 LOC100838919 ELF7 LOC100800148 LOC100797526 LOC101254885 LOC103847442 LOC100254912 LOC7470582 LOC7461933 LOC11431121 LOC107889105 LOC107891711 LOC107950655 LOC106372591 LOC106384513 LOC102605366 LOC102610204 LOC107768468 LOC107826626 CHLRE_12g520250v5
Function* protein PAF1 homolog uncharacterized LOC100279273 uncharacterized LOC100273854 protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog hydroxyproline-rich glycoprotein family protein protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog protein PAF1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00510 N-Glycan biosynthesis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre03040 Spliceosome 3
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8069621 100279273 100273854 4344699 123059779 123068194 123155727 123413084 123442375 100838919 844312 100800148 100797526 101254885 103847442 100254912 7470582 7461933 11431121 107889105 107891711 107950655 106372591 106384513 102605366 102610204 107768468 107826626 5722595
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