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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_14g610950v5   uncharacterized protein 
 ath-u.5   PBD1   20S proteasome beta subunit D1 
 ath-u.5   PBD2   20S proteasome beta subunit D2 
 gma-u.5   100306158   uncharacterized LOC100306158 
 gma-u.5   100499738   proteasome subunit beta type-2 
 sly-u.5   101249580   proteasome subunit beta type-2-B 
 osa-u.5   4333803   proteasome subunit beta type-2-like 
 zma-u.5   100282105   uncharacterized LOC100282105 
 zma-u.5   100282158   uncharacterized LOC100282158 
 bra-r.6   103869021   proteasome subunit beta type-2-A 
 bra-r.6   103868343   proteasome subunit beta type-2-A 
 bra-r.6   103868009   proteasome subunit beta type-2-A-like 
 vvi-u.5   100852565   proteasome subunit beta type-2-A 
 ppo-u.5   7498066   proteasome subunit beta type-2-A 
 ppo-u.5   18101569   proteasome subunit beta type-2-A 
 mtr-u.5   11443159   proteasome subunit beta type-2-B 
 mtr-u.5   11422291   proteasome subunit beta type-2-A 
 mtr-u.5   11436484   proteasome subunit beta type-2-B 
 tae-r.2   123095779   proteasome subunit beta type-2 
 tae-r.2   123087191   proteasome subunit beta type-2 
 tae-r.2   543169   proteasome subunit beta type-2 
 hvu-r.1   123447267   proteasome subunit beta type-2 
 ghi-r.1   107928600   proteasome subunit beta type-2-A 
 ghi-r.1   107927786   proteasome subunit beta type-2-B 
 ghi-r.1   107929051   proteasome subunit beta type-2-A 
 bna-r.1   125609431   proteasome subunit beta type-2-A-like 
 bna-r.1   125597756   proteasome subunit beta type-2-A-like 
 bna-r.1   125591553   proteasome subunit beta type-2-A-like 
 sbi-r.1   8062956   proteasome subunit beta type-2 
 sot-r.1   102598896   proteasome subunit beta type-2-B 
 cit-r.1   102616535   proteasome subunit beta type-2-A 
 bdi-r.1   100827540   proteasome subunit beta type-2 
 nta-r.1   107794572   proteasome subunit beta type-2-A 
 nta-r.1   107776568   proteasome subunit beta type-2-A 

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Top 50 coexpressed genes to CHLRE_14g610950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_14g610950v5 (cre-r.1 coexpression data)

CoexMap"5724572"


creCHLRE_14g610950v5 | Entrez gene ID : 5724572      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 1 1 2 3 1 2 3 3 1 3 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03050 [list] [network] Proteasome (36 genes)
GO BP
GO:0010498 [list] [network] proteasomal protein catabolic process  (106 genes)  IEA  
GO CC
GO:0019774 [list] [network] proteasome core complex, beta-subunit complex  (2 genes)  IEA  
GO:0005839 [list] [network] proteasome core complex  (16 genes)  IEA  
GO:0005829 [list] [network] cytosol  (481 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0008233 [list] [network] peptidase activity  (305 genes)  IEA  
Protein XP_001698962.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9  (predict for XP_001698962.1)
Subcellular
localization
TargetP
other 8,  scret 6  (predict for XP_001698962.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_14g610950v5
ath-u.5
for
PBD1
ath-u.5
for
PBD2
gma-u.5
for
100306158
gma-u.5
for
100499738
sly-u.5
for
101249580
osa-u.5
for
4333803
zma-u.5
for
100282105
zma-u.5
for
100282158
bra-r.6
for
103869021
bra-r.6
for
103868343
bra-r.6
for
103868009
vvi-u.5
for
100852565
ppo-u.5
for
7498066
ppo-u.5
for
18101569
mtr-u.5
for
11443159
mtr-u.5
for
11422291
mtr-u.5
for
11436484
tae-r.2
for
123095779
tae-r.2
for
123087191
tae-r.2
for
543169
hvu-r.1
for
123447267
ghi-r.1
for
107928600
ghi-r.1
for
107927786
ghi-r.1
for
107929051
bna-r.1
for
125609431
bna-r.1
for
125597756
bna-r.1
for
125591553
sbi-r.1
for
8062956
sot-r.1
for
102598896
cit-r.1
for
102616535
bdi-r.1
for
100827540
nta-r.1
for
107794572
nta-r.1
for
107776568


Ortholog ID: 3583
Species cre ath ath gma gma sly osa zma zma bra bra bra vvi ppo ppo mtr mtr mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_14g610950v5 PBD1 PBD2 LOC100306158 LOC100499738 LOC101249580 LOC4333803 LOC100282105 LOC100282158 LOC103869021 LOC103868009 LOC103833473 LOC100852565 LOC7498066 LOC18101569 LOC11443159 LOC11422291 LOC11436484 LOC123095779 LOC123087191 LOC543169 LOC123447267 LOC107928600 LOC107929051 LOC121214784 LOC125591553 LOC106395413 LOC106365197 LOC8062956 LOC102598896 LOC102616535 LOC100827540 LOC107794572 LOC107776568
Function* uncharacterized protein 20S proteasome beta subunit D1 20S proteasome beta subunit D2 uncharacterized LOC100306158 proteasome subunit beta type-2 proteasome subunit beta type-2-B proteasome subunit beta type-2-like uncharacterized LOC100282105 uncharacterized LOC100282158 proteasome subunit beta type-2-A proteasome subunit beta type-2-A-like proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-B proteasome subunit beta type-2-A proteasome subunit beta type-2-B proteasome subunit beta type-2 proteasome subunit beta type-2 proteasome subunit beta type-2 proteasome subunit beta type-2 proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-B proteasome subunit beta type-2-A-like proteasome subunit beta type-2-A proteasome subunit beta type-2-A-like proteasome subunit beta type-2 proteasome subunit beta type-2-B proteasome subunit beta type-2-A proteasome subunit beta type-2 proteasome subunit beta type-2-A proteasome subunit beta type-2-A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 14
gma00780 Biotin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 16
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 13
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 19
bra00010 Glycolysis / Gluconeogenesis 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
ppo00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 13
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 15
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 16
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 12
hvu00020 Citrate cycle (TCA cycle) 2
hvu00190 Oxidative phosphorylation 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 12
ghi00030 Pentose phosphate pathway 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 12
ghi00030 Pentose phosphate pathway 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 17
ghi00030 Pentose phosphate pathway 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna04144 Endocytosis 2
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna03082 ATP-dependent chromatin remodeling 4
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi04141 Protein processing in endoplasmic reticulum 4
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 13
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 12
nta00190 Oxidative phosphorylation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5724572 821834 827135 100306158 100499738 101249580 4333803 100282105 100282158 103869021 103868009 103833473 100852565 7498066 18101569 11443159 11422291 11436484 123095779 123087191 543169 123447267 107928600 107929051 121214784 125591553 106395413 106365197 8062956 102598896 102616535 100827540 107794572 107776568
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