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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PBD2   20S proteasome beta subunit D2 
 ath-r.7   PBD2   20S proteasome beta subunit D2 
 ath-m.9   PBD2   20S proteasome beta subunit D2 
 ath-e.2   PBD2   20S proteasome beta subunit D2 
 ath-m.4.bio   PBD2   20S proteasome beta subunit D2 
 ath-m.4.hor   PBD2   20S proteasome beta subunit D2 
 ath-m.4.lig   PBD2   20S proteasome beta subunit D2 
 ath-m.4.str   PBD2   20S proteasome beta subunit D2 
 ath-m.4.tis   PBD2   20S proteasome beta subunit D2 
 ath-u.5   PBD1   20S proteasome beta subunit D1 
 gma-u.5   100306158   uncharacterized LOC100306158 
 gma-u.5   100499738   proteasome subunit beta type-2 
 vvi-u.5   100852565   proteasome subunit beta type-2-A 
 ppo-u.5   7498066   proteasome subunit beta type-2-A 
 ppo-u.5   18101569   proteasome subunit beta type-2-A 
 mtr-u.5   11436484   proteasome subunit beta type-2-B 
 mtr-u.5   11422291   proteasome subunit beta type-2-A 
 mtr-u.5   11443159   proteasome subunit beta type-2-B 
 sly-u.5   101249580   proteasome subunit beta type-2-B 
 osa-u.5   4333803   proteasome subunit beta type-2-like 
 zma-u.5   100282158   uncharacterized LOC100282158 
 zma-u.5   100282105   uncharacterized LOC100282105 

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Top 50 coexpressed genes to PBD2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PBD2 (ath-u.5 coexpression data)

CoexMap"827135"


athPBD2 | Entrez gene ID : 827135      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 2 1 2 3 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO:0046686 [list] [network] response to cadmium ion  (81 genes)  IEP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0019774 [list] [network] proteasome core complex, beta-subunit complex  (11 genes)  ISS  
GO:0005839 [list] [network] proteasome core complex  (23 genes)  TAS  
GO:0000502 [list] [network] proteasome complex  (53 genes)  IDA  
GO:0099503 [list] [network] secretory vesicle  (172 genes)  HDA  
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001190731.1 [sequence] [blastp]
NP_193216.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 7,  cyto 3  (predict for NP_001190731.1)
cysk 7,  cyto 3  (predict for NP_193216.1)
Subcellular
localization
TargetP
scret 7,  other 5  (predict for NP_001190731.1)
scret 6,  other 5  (predict for NP_193216.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PBD2
ath-r.7
for
PBD2
ath-m.9
for
PBD2
ath-e.2
for
PBD2
ath-m.4.bio
for
PBD2
ath-m.4.hor
for
PBD2
ath-m.4.lig
for
PBD2
ath-m.4.str
for
PBD2
ath-m.4.tis
for
PBD2
ath-u.5
for
PBD1
gma-u.5
for
100306158
gma-u.5
for
100499738
vvi-u.5
for
100852565
ppo-u.5
for
7498066
ppo-u.5
for
18101569
mtr-u.5
for
11436484
mtr-u.5
for
11422291
mtr-u.5
for
11443159
sly-u.5
for
101249580
osa-u.5
for
4333803
zma-u.5
for
100282158
zma-u.5
for
100282105


Ortholog ID: 3583
Species ath ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol PBD1 PBD2 LOC103869021 LOC103868009 LOC125591553 LOC106365197 LOC107928600 LOC121214784 LOC102616535 LOC100499738 LOC100306158 LOC100852565 LOC18101569 LOC7498066 LOC11422291 LOC11436484 LOC101249580 LOC102598896 LOC107776568 LOC107794572 LOC4333803 LOC100282158 LOC100282105 LOC123087191 LOC543169 LOC123447267 LOC8062956 LOC100827540 CHLRE_14g610950v5
Function* 20S proteasome beta subunit D1 20S proteasome beta subunit D2 proteasome subunit beta type-2-A proteasome subunit beta type-2-A-like proteasome subunit beta type-2-A-like proteasome subunit beta type-2-A-like proteasome subunit beta type-2-A proteasome subunit beta type-2-B proteasome subunit beta type-2-A proteasome subunit beta type-2 uncharacterized LOC100306158 proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-B proteasome subunit beta type-2-B proteasome subunit beta type-2-B proteasome subunit beta type-2-A proteasome subunit beta type-2-A proteasome subunit beta type-2-like uncharacterized LOC100282158 uncharacterized LOC100282105 proteasome subunit beta type-2 proteasome subunit beta type-2 proteasome subunit beta type-2 proteasome subunit beta type-2 proteasome subunit beta type-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 13
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna03082 ATP-dependent chromatin remodeling 4
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 12
ghi00030 Pentose phosphate pathway 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 17
ghi00030 Pentose phosphate pathway 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 13
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 14
gma00780 Biotin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
ppo00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 12
nta00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 16
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 15
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 16
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 12
hvu00020 Citrate cycle (TCA cycle) 2
hvu00190 Oxidative phosphorylation 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi04141 Protein processing in endoplasmic reticulum 4
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 16
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821834 827135 103869021 103868009 125591553 106365197 107928600 121214784 102616535 100499738 100306158 100852565 18101569 7498066 11422291 11436484 101249580 102598896 107776568 107794572 4333803 100282158 100282105 123087191 543169 123447267 8062956 100827540 5724572
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