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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g683793v5   uncharacterized protein 
 ath-u.5   AT5G14520   pescadillo-like protein 
 gma-u.5   100819628   pescadillo homolog 
 gma-u.5   100814855   pescadillo homolog 
 sly-u.5   101257580   pescadillo homolog 
 osa-u.5   4333814   pescadillo homolog 
 zma-u.5   100280505   uncharacterized LOC100280505 
 vvi-u.5   100262902   pescadillo homolog 
 ppo-u.5   7463036   pescadillo homolog 
 mtr-u.5   11424573   pescadillo homolog 

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Top 50 coexpressed genes to CHLRE_16g683793v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g683793v5 (cre-r.1 coexpression data)

CoexMap"5724754"


creCHLRE_16g683793v5 | Entrez gene ID : 5724754    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (11 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (274 genes)  IEA  
GO CC
GO:0070545 [list] [network] PeBoW complex  (2 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042915752.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1  (predict for XP_042915752.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_042915752.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g683793v5

.
ath-u.5
for
AT5G14520

.
gma-u.5
for
100819628

.
gma-u.5
for
100814855

.
sly-u.5
for
101257580

.
osa-u.5
for
4333814

.
zma-u.5
for
100280505

.
vvi-u.5
for
100262902

.
ppo-u.5
for
7463036

.
mtr-u.5
for
11424573

.


Ortholog ID: 9659
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G14520 LOC100814855 LOC100819628 LOC101257580 LOC4333814 LOC100280505 LOC103856085 LOC100262902 LOC7463036 LOC11424573 LOC123087180 LOC123090784 LOC123447302 LOC107926534 LOC107922956 LOC106418518 LOC106431646 CHLRE_16g683793v5 LOC8062948 LOC102588856 LOC102620972 LOC100832516 LOC107760163 LOC107768178
Function* pescadillo-like protein pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog uncharacterized LOC100280505 pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog uncharacterized protein pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog pescadillo homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03010 Ribosome 3
ghi00261 Monobactam biosynthesis 2
ghi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03082 ATP-dependent chromatin remodeling 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831303 100814855 100819628 101257580 4333814 100280505 103856085 100262902 7463036 11424573 123087180 123090784 123447302 107926534 107922956 106418518 106431646 5724754 8062948 102588856 102620972 100832516 107760163 107768178
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