ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_16g676314v5	uncharacterized protein
ath-u.5	TIF3H1	translation initiation factor 3 subunit H1
gma-u.5	100795273	eukaryotic translation initiation factor 3 subunit H-like
gma-u.5	100814297	eukaryotic translation initiation factor 3 subunit H
sly-u.5	101255380	eukaryotic translation initiation factor 3 subunit H
sly-u.5	101259786	eukaryotic translation initiation factor 3 subunit H
osa-u.5	4335611	eukaryotic translation initiation factor 3 subunit H
zma-u.5	100272851	eukaryotic translation initiation factor 3 subunit 3
zma-u.5	100280503	uncharacterized LOC100280503
bra-r.6	103868071	eukaryotic translation initiation factor 3 subunit H
bra-r.6	103843266	eukaryotic translation initiation factor 3 subunit H
bra-r.6	103871858	eukaryotic translation initiation factor 3 subunit H
vvi-u.5	100248036	eukaryotic translation initiation factor 3 subunit H
ppo-u.5	7481923	eukaryotic translation initiation factor 3 subunit H
ppo-u.5	7466322	eukaryotic translation initiation factor 3 subunit H
mtr-u.5	11438282	eukaryotic translation initiation factor 3 subunit H
tae-r.2	123189015	eukaryotic translation initiation factor 3 subunit H
tae-r.2	123053107	eukaryotic translation initiation factor 3 subunit H
tae-r.2	123045272	eukaryotic translation initiation factor 3 subunit H
hvu-r.1	123426494	eukaryotic translation initiation factor 3 subunit H
ghi-r.1	107890527	eukaryotic translation initiation factor 3 subunit H
ghi-r.1	107903821	eukaryotic translation initiation factor 3 subunit H
ghi-r.1	121221001	eukaryotic translation initiation factor 3 subunit H
bna-r.1	106420231	eukaryotic translation initiation factor 3 subunit H
bna-r.1	106415679	eukaryotic translation initiation factor 3 subunit H-like
bna-r.1	106413826	eukaryotic translation initiation factor 3 subunit H
sbi-r.1	8058666	eukaryotic translation initiation factor 3 subunit H
sot-r.1	102601497	eukaryotic translation initiation factor 3 subunit H
sot-r.1	102604600	eukaryotic translation initiation factor 3 subunit H-like
cit-r.1	102615701	eukaryotic translation initiation factor 3 subunit H
bdi-r.1	100826610	eukaryotic translation initiation factor 3 subunit H
nta-r.1	107789396	eukaryotic translation initiation factor 3 subunit H
nta-r.1	107828315	eukaryotic translation initiation factor 3 subunit H-like
nta-r.1	107805325	eukaryotic translation initiation factor 3 subunit H

Top 50 coexpressed genes to CHLRE_16g676314v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_16g676314v5 (cre-r.1 coexpression data)

CoexMap"5724761"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0016282 [list] [network] eukaryotic 43S preinitiation complex	(1 genes)	IEA
GO:0005852 [list] [network] eukaryotic translation initiation factor 3 complex	(13 genes)	IEA
GO:0005829 [list] [network] cytosol	(481 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(2907 genes)	IEA

GO MF

GO:0003743 [list] [network] translation initiation factor activity	(37 genes)	IEA
GO:0008237 [list] [network] metallopeptidase activity	(90 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_001699272.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3

(predict for XP_001699272.1)

Subcellular
localization
TargetP

other 8

(predict for XP_001699272.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_16g676314v5	ath-u.5 for TIF3H1	gma-u.5 for 100795273	gma-u.5 for 100814297	sly-u.5 for 101255380	sly-u.5 for 101259786	osa-u.5 for 4335611	zma-u.5 for 100272851	zma-u.5 for 100280503	bra-r.6 for 103868071	bra-r.6 for 103843266	bra-r.6 for 103871858	vvi-u.5 for 100248036	ppo-u.5 for 7481923	ppo-u.5 for 7466322	mtr-u.5 for 11438282	tae-r.2 for 123189015	tae-r.2 for 123053107	tae-r.2 for 123045272	hvu-r.1 for 123426494	ghi-r.1 for 107890527	ghi-r.1 for 107903821	ghi-r.1 for 121221001	bna-r.1 for 106420231	bna-r.1 for 106415679	bna-r.1 for 106413826	sbi-r.1 for 8058666	sot-r.1 for 102601497	sot-r.1 for 102604600	cit-r.1 for 102615701	bdi-r.1 for 100826610	nta-r.1 for 107789396	nta-r.1 for 107828315	nta-r.1 for 107805325

Ortholog

Ortholog ID: 5403

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

TIF3H1

Function^*

uncharacterized protein

translation initiation factor 3 subunit H1

eukaryotic translation initiation factor 3 subunit H-like

eukaryotic translation initiation factor 3 subunit H

eukaryotic translation initiation factor 3 subunit 3

uncharacterized LOC100280503

eukaryotic translation initiation factor 3 subunit H

eukaryotic translation initiation factor 3 subunit H-like

eukaryotic translation initiation factor 3 subunit H

eukaryotic translation initiation factor 3 subunit H-like

eukaryotic translation initiation factor 3 subunit H

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath03008	Ribosome biogenesis in eukaryotes	2
ath04712	Circadian rhythm - plant	2
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	3
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	6
bra03040	Spliceosome	3
bra03020	RNA polymerase	2
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo03040	Spliceosome	2
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	9
hvu03040	Spliceosome	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	10
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	11
ghi03013	Nucleocytoplasmic transport	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	10
ghi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	5
bna03420	Nucleotide excision repair	5
bna03010	Ribosome	3
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	3
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	3
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	3
sot04144	Endocytosis	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit04120	Ubiquitin mediated proteolysis	3
cit04141	Protein processing in endoplasmic reticulum	2
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta03060	Protein export	2
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	2
nta03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

5724761

837627

100795273

100814297

101255380

101259786

4335611

100272851

100280503

103868071

103843266

103871858

100248036

7481923

7466322

11438282

123189015

123053107

123045272

123426494

107890527

107903821

121221001

106420231

106413826

106362127

8058666

102601497

102604600

102615701

100826610

107789396

107828315

107805315

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	2	1	2	3	1	2	1	3	1	3	3	1	2	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_16g676314v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_16g676314v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**