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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g492450v5   uncharacterized protein 
 ath-u.5   AT2G35920   RNA helicase family protein 
 gma-u.5   100792823   DExH-box ATP-dependent RNA helicase DExH1 
 gma-u.5   100792623   DExH-box ATP-dependent RNA helicase DExH1 
 sly-u.5   101264453   DExH-box ATP-dependent RNA helicase DExH1 
 osa-u.5   4348871   DExH-box ATP-dependent RNA helicase DExH1 
 zma-u.5   103643471   DExH-box ATP-dependent RNA helicase DExH1 
 vvi-u.5   100252028   DExH-box ATP-dependent RNA helicase DExH1 
 ppo-u.5   7469944   DExH-box ATP-dependent RNA helicase DExH1 
 mtr-u.5   11424426   DExH-box ATP-dependent RNA helicase DExH1 

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Top 50 coexpressed genes to CHLRE_12g492450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g492450v5 (cre-r.1 coexpression data)

CoexMap"5726131"


creCHLRE_12g492450v5 | Entrez gene ID : 5726131    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005622 [list] [network] intracellular anatomical structure  (4579 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042917969.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  cysk_nucl 2,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_042917969.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042917969.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g492450v5

.
ath-u.5
for
AT2G35920

.
gma-u.5
for
100792823

.
gma-u.5
for
100792623

.
sly-u.5
for
101264453

.
osa-u.5
for
4348871

.
zma-u.5
for
103643471

.
vvi-u.5
for
100252028

.
ppo-u.5
for
7469944

.
mtr-u.5
for
11424426

.


Ortholog ID: 8904
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol AT2G35920 LOC100792623 LOC100792823 LOC101264453 LOC4348871 LOC103643471 LOC103857598 LOC100252028 LOC7469944 LOC11424426 LOC123045164 LOC123181008 LOC123430684 LOC107899406 LOC107948284 LOC125606449 LOC106388140 CHLRE_03g171650v5 CHLRE_12g492450v5 LOC8070497 LOC102584740 LOC102628348 LOC100834725 LOC107798029 LOC107787244
Function* RNA helicase family protein DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1-like DExH-box ATP-dependent RNA helicase DExH1 uncharacterized protein uncharacterized protein DExH-box ATP-dependent RNA helicase DExH1 ATP-dependent RNA helicase DHX36 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1 DExH-box ATP-dependent RNA helicase DExH1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03015 mRNA surveillance pathway 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03018 RNA degradation 3
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 7
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03018 RNA degradation 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03018 RNA degradation 4
tae03082 ATP-dependent chromatin remodeling 3
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 8
ghi04075 Plant hormone signal transduction 8
ghi04626 Plant-pathogen interaction 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 10
ghi04626 Plant-pathogen interaction 6
ghi03013 Nucleocytoplasmic transport 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 13
bna03018 RNA degradation 2
bna03030 DNA replication 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 13
bna03018 RNA degradation 2
bna03030 DNA replication 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818165 100792623 100792823 101264453 4348871 103643471 103857598 100252028 7469944 11424426 123045164 123181008 123430684 107899406 107948284 125606449 106388140 5728925 5726131 8070497 102584740 102628348 100834725 107798029 107787244
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