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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_05g233950v5   uncharacterized protein 
 ath-u.5   AT4G01150   CURVATURE THYLAKOID 1A-like protein 
 gma-u.5   100775367   protein CURVATURE THYLAKOID 1A, chloroplastic 
 gma-u.5   100305578   CAAD domain-containing protein 
 sly-u.5   101260274   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 sly-u.5   101248140   protein CURVATURE THYLAKOID 1A, chloroplastic 
 osa-u.5   4340704   protein CURVATURE THYLAKOID 1A, chloroplastic 
 osa-u.5   4345635   protein CURVATURE THYLAKOID 1A, chloroplastic 
 osa-u.5   4330625   protein CURVATURE THYLAKOID 1A, chloroplastic 
 zma-u.5   100276013   uncharacterized LOC100276013 
 zma-u.5   100273445   Threonine endopeptidase 
 zma-u.5   100282910   Threonine endopeptidase 
 bra-r.6   103836875   protein CURVATURE THYLAKOID 1A, chloroplastic 
 bra-r.6   103853325   protein CURVATURE THYLAKOID 1A, chloroplastic 
 bra-r.6   117132370   protein CURVATURE THYLAKOID 1A, chloroplastic 
 vvi-u.5   100253425   protein CURVATURE THYLAKOID 1A, chloroplastic 
 vvi-u.5   100246662   protein CURVATURE THYLAKOID 1A, chloroplastic 
 ppo-u.5   7492752   protein CURVATURE THYLAKOID 1A, chloroplastic 
 ppo-u.5   7457377   protein CURVATURE THYLAKOID 1A, chloroplastic 
 mtr-u.5   25499725   protein CURVATURE THYLAKOID 1A, chloroplastic 
 tae-r.2   123128288   protein CURVATURE THYLAKOID 1A, chloroplastic 
 tae-r.2   123138141   protein CURVATURE THYLAKOID 1A, chloroplastic 
 tae-r.2   123141756   protein CURVATURE THYLAKOID 1A, chloroplastic 
 hvu-r.1   123402356   protein CURVATURE THYLAKOID 1A, chloroplastic 
 hvu-r.1   123412295   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 ghi-r.1   107933524   protein CURVATURE THYLAKOID 1A, chloroplastic 
 ghi-r.1   107924157   protein CURVATURE THYLAKOID 1A, chloroplastic 
 ghi-r.1   107909770   protein CURVATURE THYLAKOID 1A, chloroplastic 
 bna-r.1   125593226   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 bna-r.1   125586324   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 bna-r.1   106438622   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 sbi-r.1   8065769   protein CURVATURE THYLAKOID 1A, chloroplastic 
 sot-r.1   102596366   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 sot-r.1   102595149   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 cit-r.1   102606616   protein CURVATURE THYLAKOID 1A, chloroplastic 
 cit-r.1   127901041   protein CURVATURE THYLAKOID 1A, chloroplastic-like 
 bdi-r.1   100837661   protein CURVATURE THYLAKOID 1A, chloroplastic 
 nta-r.1   107808435   protein CURVATURE THYLAKOID 1A, chloroplastic 
 nta-r.1   107820363   protein CURVATURE THYLAKOID 1A, chloroplastic 

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Top 50 coexpressed genes to CHLRE_05g233950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_05g233950v5 (cre-r.1 coexpression data)

CoexMap"5727729"


creCHLRE_05g233950v5 | Entrez gene ID : 5727729      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 2 3 3 3 2 2 1 3 2 3 3 1 2 2 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009579 [list] [network] thylakoid  (93 genes)  IEA  
GO MF
Protein XP_001702208.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 3  (predict for XP_001702208.2)
Subcellular
localization
TargetP
mito 7,  chlo 4  (predict for XP_001702208.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_05g233950v5
ath-u.5
for
AT4G01150
gma-u.5
for
100775367
gma-u.5
for
100305578
sly-u.5
for
101260274
sly-u.5
for
101248140
osa-u.5
for
4340704
osa-u.5
for
4345635
osa-u.5
for
4330625
zma-u.5
for
100276013
zma-u.5
for
100273445
zma-u.5
for
100282910
bra-r.6
for
103836875
bra-r.6
for
103853325
bra-r.6
for
117132370
vvi-u.5
for
100253425
vvi-u.5
for
100246662
ppo-u.5
for
7492752
ppo-u.5
for
7457377
mtr-u.5
for
25499725
tae-r.2
for
123128288
tae-r.2
for
123138141
tae-r.2
for
123141756
hvu-r.1
for
123402356
hvu-r.1
for
123412295
ghi-r.1
for
107933524
ghi-r.1
for
107924157
ghi-r.1
for
107909770
bna-r.1
for
125593226
bna-r.1
for
125586324
bna-r.1
for
106438622
sbi-r.1
for
8065769
sot-r.1
for
102596366
sot-r.1
for
102595149
cit-r.1
for
102606616
cit-r.1
for
127901041
bdi-r.1
for
100837661
nta-r.1
for
107808435
nta-r.1
for
107820363


Ortholog ID: 3483
Species cre ath gma gma sly sly osa osa osa zma zma zma bra bra bra vvi vvi ppo ppo mtr tae tae tae hvu hvu ghi ghi ghi bna bna bna sbi sot sot cit cit bdi nta nta
Symbol CHLRE_05g233950v5 AT4G01150 LOC100775367 LOC100305578 LOC101260274 LOC101248140 LOC4340704 LOC4345635 LOC4330625 LOC100276013 LOC100273445 LOC100282910 LOC103836875 LOC103853325 LOC117132370 LOC100253425 LOC100246662 LOC7492752 LOC7457377 LOC25499725 LOC123138141 LOC123160120 LOC123150665 LOC123402356 LOC123412295 LOC107955260 LOC107900934 LOC107954513 LOC125593226 LOC106398836 LOC106388745 LOC8065769 LOC102596366 LOC102595149 LOC102606616 LOC127901041 LOC100837661 LOC107808435 LOC107820363
Function* uncharacterized protein CURVATURE THYLAKOID 1A-like protein protein CURVATURE THYLAKOID 1A, chloroplastic CAAD domain-containing protein protein CURVATURE THYLAKOID 1A, chloroplastic-like protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic uncharacterized LOC100276013 Threonine endopeptidase Threonine endopeptidase protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic-like protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic-like protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic-like protein CURVATURE THYLAKOID 1A, chloroplastic-like protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic-like protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic protein CURVATURE THYLAKOID 1A, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 13
ath00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 8
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 11
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 8
osa00196 Photosynthesis - antenna proteins 2
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 7
zma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 9
zma00710 Carbon fixation by Calvin cycle 5
zma01200 Carbon metabolism 5
zma00630 Glyoxylate and dicarboxylate metabolism 2
zma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 6
zma01200 Carbon metabolism 6
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 10
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 12
ppo00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 12
mtr00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 5
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 7
tae00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 9
hvu00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 7
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 12
ghi00710 Carbon fixation by Calvin cycle 10
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 12
ghi00710 Carbon fixation by Calvin cycle 10
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 5
sbi01200 Carbon metabolism 5
sbi00196 Photosynthesis - antenna proteins 4
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 11
sot00010 Glycolysis / Gluconeogenesis 2
sot00710 Carbon fixation by Calvin cycle 2
sot01200 Carbon metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot00195 Photosynthesis 4
sot00710 Carbon fixation by Calvin cycle 2
sot01200 Carbon metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00196 Photosynthesis - antenna proteins 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 6
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta03010 Ribosome 2
nta00860 Porphyrin metabolism 2
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
nta00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5727729 828181 100775367 100305578 101260274 101248140 4340704 4345635 4330625 100276013 100273445 100282910 103836875 103853325 117132370 100253425 100246662 7492752 7457377 25499725 123138141 123160120 123150665 123402356 123412295 107955260 107900934 107954513 125593226 106398836 106388745 8065769 102596366 102595149 102606616 127901041 100837661 107808435 107820363
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