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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g175800v5   uncharacterized protein 
 ath-u.5   AT1G50000   methyltransferase 
 gma-u.5   100777253   ribosomal RNA small subunit methyltransferase E 
 sly-u.5   101260770   uncharacterized LOC101260770 
 osa-u.5   4333992   uncharacterized LOC4333992 
 zma-u.5   103653089   uncharacterized LOC103653089 
 zma-u.5   100279709   uncharacterized LOC100279709 
 bra-r.6   103871373   ribosomal RNA small subunit methyltransferase E 
 vvi-u.5   100258322   uncharacterized LOC100258322 
 ppo-u.5   7470758   uncharacterized LOC7470758 
 mtr-u.5   25485320   ribosomal RNA small subunit methyltransferase E 
 ghi-r.1   121224623   ribosomal RNA small subunit methyltransferase E 
 ghi-r.1   107947400   ribosomal RNA small subunit methyltransferase E 
 sbi-r.1   8060533   ribosomal RNA small subunit methyltransferase E 
 sot-r.1   102579517   ribosomal RNA small subunit methyltransferase E 
 cit-r.1   102624062   uncharacterized LOC102624062 
 bdi-r.1   100841987   ribosomal RNA small subunit methyltransferase E 
 nta-r.1   107814615   uncharacterized LOC107814615 
 nta-r.1   107815886   uncharacterized LOC107815886 

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Top 50 coexpressed genes to CHLRE_03g175800v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g175800v5 (cre-r.1 coexpression data)

CoexMap"5728859"


creCHLRE_03g175800v5 | Entrez gene ID : 5728859      
Species cre ath gma sly osa zma bra vvi ppo mtr ghi sbi sot cit bdi nta tae bna hvu
Paralog 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 2 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070475 [list] [network] rRNA base methylation  (14 genes)  IEA  
GO CC
GO MF
GO:0070042 [list] [network] rRNA (uridine-N3-)-methyltransferase activity  (1 genes)  IEA  
Protein XP_042926086.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1  (predict for XP_042926086.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_042926086.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g175800v5
ath-u.5
for
AT1G50000
gma-u.5
for
100777253
sly-u.5
for
101260770
osa-u.5
for
4333992
zma-u.5
for
103653089
zma-u.5
for
100279709
bra-r.6
for
103871373
vvi-u.5
for
100258322
ppo-u.5
for
7470758
mtr-u.5
for
25485320
ghi-r.1
for
121224623
ghi-r.1
for
107947400
sbi-r.1
for
8060533
sot-r.1
for
102579517
cit-r.1
for
102624062
bdi-r.1
for
100841987
nta-r.1
for
107814615
nta-r.1
for
107815886


Ortholog ID: 9836
Species cre ath gma sly osa zma zma bra vvi ppo mtr ghi ghi sbi sot cit bdi nta nta
Symbol CHLRE_03g175800v5 AT1G50000 LOC100777253 LOC101260770 LOC4333992 LOC103653089 LOC100279709 LOC103871373 LOC100258322 LOC7470758 LOC25485320 LOC121224623 LOC107947400 LOC8060533 LOC102579517 LOC102624062 LOC100841987 LOC107814615 LOC107815886
Function* uncharacterized protein methyltransferase ribosomal RNA small subunit methyltransferase E uncharacterized LOC101260770 uncharacterized LOC4333992 uncharacterized LOC103653089 uncharacterized LOC100279709 ribosomal RNA small subunit methyltransferase E uncharacterized LOC100258322 uncharacterized LOC7470758 ribosomal RNA small subunit methyltransferase E ribosomal RNA small subunit methyltransferase E ribosomal RNA small subunit methyltransferase E ribosomal RNA small subunit methyltransferase E ribosomal RNA small subunit methyltransferase E uncharacterized LOC102624062 ribosomal RNA small subunit methyltransferase E uncharacterized LOC107814615 uncharacterized LOC107815886
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728859 841424 100777253 101260770 4333992 103653089 100279709 103871373 100258322 7470758 25485320 121224623 107947400 8060533 102579517 102624062 100841987 107814615 107815886
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