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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g340550v5   uncharacterized protein 
 ath-u.5   AT5G38600   Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 
 ath-u.5   AT1G67210   Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 
 gma-u.5   100805423   uncharacterized LOC100805423 
 gma-u.5   100782251   uncharacterized LOC100782251 
 gma-u.5   100527170   PSP domain-containing protein 
 sly-u.5   101255771   uncharacterized LOC101255771 
 osa-u.5   4341097   uncharacterized LOC4341097 
 zma-u.5   100282695   nucleic acid binding protein 
 vvi-u.5   100267904   uncharacterized LOC100267904 
 vvi-u.5   100247996   uncharacterized LOC100247996 
 ppo-u.5   18107409   uncharacterized LOC18107409 
 ppo-u.5   7494553   uncharacterized LOC7494553 
 mtr-u.5   25495576   uncharacterized LOC25495576 

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Top 50 coexpressed genes to CHLRE_07g340550v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g340550v5 (cre-r.1 coexpression data)

CoexMap"66054111"


creCHLRE_07g340550v5 | Entrez gene ID : 66054111    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 1 1 1 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0071013 [list] [network] catalytic step 2 spliceosome  (45 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042922913.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  cyto_pero 2,  pero 1,  chlo 1,  mito 1,  E.R. 1,  chlo_mito 1  (predict for XP_042922913.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042922913.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g340550v5

.
ath-u.5
for
AT5G38600

.
ath-u.5
for
AT1G67210

.
gma-u.5
for
100805423

.
gma-u.5
for
100782251

.
gma-u.5
for
100527170

.
sly-u.5
for
101255771

.
osa-u.5
for
4341097

.
zma-u.5
for
100282695

.
vvi-u.5
for
100267904

.
vvi-u.5
for
100247996

.
ppo-u.5
for
18107409

.
ppo-u.5
for
7494553

.
mtr-u.5
for
25495576

.


Ortholog ID: 6662
Species ath ath gma gma sly osa zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G67210 AT5G38600 LOC100805423 LOC100527170 LOC101255771 LOC4341097 LOC100282695 LOC103852381 LOC103850124 LOC100267904 LOC100247996 LOC18107409 LOC7494553 LOC25495576 LOC123090463 LOC123090465 LOC123446789 LOC107936855 LOC107893182 LOC106352658 LOC106378853 CHLRE_07g340550v5 LOC8068899 LOC102582187 LOC102626617 LOC100833249 LOC107778684 LOC107772086
Function* Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein uncharacterized LOC100805423 PSP domain-containing protein uncharacterized LOC101255771 uncharacterized LOC4341097 nucleic acid binding protein uncharacterized LOC103852381 zinc finger CCHC domain-containing protein 8 uncharacterized LOC100267904 uncharacterized LOC100247996 uncharacterized LOC18107409 uncharacterized LOC7494553 uncharacterized LOC25495576 zinc finger CCHC domain-containing protein 8 uncharacterized LOC123090465 zinc finger CCHC domain-containing protein 8-like zinc finger CCHC domain-containing protein 8 uncharacterized LOC107893182 zinc finger CCHC domain-containing protein 8 uncharacterized LOC106378853 uncharacterized protein uncharacterized LOC8068899 uncharacterized LOC102582187 uncharacterized LOC102626617 uncharacterized LOC100833249 uncharacterized LOC107778684 uncharacterized LOC107772086
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
bna03250 Viral life cycle - HIV-1 4
bna03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 7
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843041 833850 100805423 100527170 101255771 4341097 100282695 103852381 103850124 100267904 100247996 18107409 7494553 25495576 123090463 123090465 123446789 107936855 107893182 106352658 106378853 66054111 8068899 102582187 102626617 100833249 107778684 107772086
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