ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8068899	uncharacterized LOC8068899
zma-u.5	100282695	nucleic acid binding protein
osa-u.5	4341097	uncharacterized LOC4341097
tae-r.2	123095548	uncharacterized LOC123095548
tae-r.2	123090463	zinc finger CCHC domain-containing protein 8
tae-r.2	123084666	uncharacterized LOC123084666
hvu-r.1	123446789	zinc finger CCHC domain-containing protein 8-like
bdi-r.1	100833249	uncharacterized LOC100833249
ath-u.5	AT5G38600	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein
ath-u.5	AT1G67210	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein
gma-u.5	100805423	uncharacterized LOC100805423
gma-u.5	100782251	uncharacterized LOC100782251
gma-u.5	100527170	PSP domain-containing protein
sly-u.5	101255771	uncharacterized LOC101255771
bra-r.6	103852381	uncharacterized LOC103852381
bra-r.6	103850124	zinc finger CCHC domain-containing protein 8
vvi-u.5	100267904	uncharacterized LOC100267904
vvi-u.5	100247996	uncharacterized LOC100247996
ppo-u.5	18107409	uncharacterized LOC18107409
ppo-u.5	7494553	uncharacterized LOC7494553
mtr-u.5	25495576	uncharacterized LOC25495576
ghi-r.1	107893182	uncharacterized LOC107893182
ghi-r.1	107936855	zinc finger CCHC domain-containing protein 8
bna-r.1	106352658	zinc finger CCHC domain-containing protein 8
bna-r.1	106391944	uncharacterized LOC106391944
bna-r.1	BNAC02G17280D	uncharacterized BNAC02G17280D
sot-r.1	102582187	uncharacterized LOC102582187
cit-r.1	102626617	uncharacterized LOC102626617
nta-r.1	107772086	uncharacterized LOC107772086
nta-r.1	107778684	uncharacterized LOC107778684
cre-r.1	CHLRE_07g340550v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0071013 [list] [network] catalytic step 2 spliceosome

(61 genes)

IEA

GO MF

GO:0008270 [list] [network] zinc ion binding	(824 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1243 genes)	IEA

Protein

XP_002452286.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_002452286.1)

Subcellular
localization
TargetP

other 8

(predict for XP_002452286.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8068899	zma-u.5 for 100282695	osa-u.5 for 4341097	tae-r.2 for 123095548	tae-r.2 for 123090463	tae-r.2 for 123084666	hvu-r.1 for 123446789	bdi-r.1 for 100833249	ath-u.5 for AT5G38600	ath-u.5 for AT1G67210	gma-u.5 for 100805423	gma-u.5 for 100782251	gma-u.5 for 100527170	sly-u.5 for 101255771	bra-r.6 for 103852381	bra-r.6 for 103850124	vvi-u.5 for 100267904	vvi-u.5 for 100247996	ppo-u.5 for 18107409	ppo-u.5 for 7494553	mtr-u.5 for 25495576	ghi-r.1 for 107893182	ghi-r.1 for 107936855	bna-r.1 for 106352658	bna-r.1 for 106391944	bna-r.1 for BNAC02G17280D	sot-r.1 for 102582187	cit-r.1 for 102626617	nta-r.1 for 107772086	nta-r.1 for 107778684	cre-r.1 for CHLRE_07g340550v5

Ortholog

Ortholog ID: 6662

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC8068899

nucleic acid binding protein

uncharacterized LOC4341097

zinc finger CCHC domain-containing protein 8

uncharacterized LOC123084666

uncharacterized LOC123090465

zinc finger CCHC domain-containing protein 8-like

uncharacterized LOC100833249

Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein

uncharacterized LOC100805423

uncharacterized LOC100782251

PSP domain-containing protein

uncharacterized LOC101255771

uncharacterized LOC103852381

zinc finger CCHC domain-containing protein 8

uncharacterized LOC100267904

uncharacterized LOC100247996

uncharacterized LOC18107409

uncharacterized LOC7494553

uncharacterized LOC25495576

uncharacterized LOC107893182

zinc finger CCHC domain-containing protein 8

uncharacterized LOC106391944

uncharacterized LOC106378853

uncharacterized LOC102582187

uncharacterized LOC102626617

uncharacterized LOC107772086

uncharacterized LOC107778684

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi03040	Spliceosome	2
sbi03015	mRNA surveillance pathway	2
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	4
bna03050	Proteasome	4
bna03040	Spliceosome	3
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	8
bna03250	Viral life cycle - HIV-1	4
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	7
cit03013	Nucleocytoplasmic transport	3
cit03015	mRNA surveillance pathway	3
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03420	Nucleotide excision repair	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta00040	Pentose and glucuronate interconversions	2

Expression

Expression pattern

Entrez Gene ID^*

8068899

100282695

4341097

123090463

123084666

123090465

123446789

100833249

833850

843041

100805423

100782251

100527170

101255771

103852381

103850124

100267904

100247996

18107409

7494553

25495576

107893182

107936855

106352658

106391944

106378853

102582187

102626617

107772086

107778684

66054111

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8068899 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8068899 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	1	1	2	3	1	2	2	2	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8068899 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8068899 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**