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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_11g482483v5   uncharacterized protein 
 ath-u.5   AT3G46960   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 gma-u.5   100788432   DExH-box ATP-dependent RNA helicase DExH11 
 sly-u.5   101264125   DExH-box ATP-dependent RNA helicase DExH11 
 osa-u.5   4328375   DExH-box ATP-dependent RNA helicase DExH11 
 zma-u.5   100383871   uncharacterized LOC100383871 
 vvi-u.5   100253599   DExH-box ATP-dependent RNA helicase DExH11 
 ppo-u.5   7468590   DExH-box ATP-dependent RNA helicase DExH11 
 mtr-u.5   25490766   DExH-box ATP-dependent RNA helicase DExH11 

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Top 50 coexpressed genes to CHLRE_11g482483v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_11g482483v5 (cre-r.1 coexpression data)

CoexMap"66055372"


creCHLRE_11g482483v5 | Entrez gene ID : 66055372    
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03018 [list] [network] RNA degradation (48 genes)
GO BP
GO:0070478 [list] [network] nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay  (2 genes)  IEA  
GO CC
GO:0055087 [list] [network] Ski complex  (3 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042919774.1 [sequence] [blastp]
XP_042919775.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  plas 2,  E.R. 2,  E.R._plas 2  (predict for XP_042919774.1)
chlo 3,  plas 2,  E.R. 2,  E.R._plas 2  (predict for XP_042919775.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_042919774.1)
other 7,  chlo 4  (predict for XP_042919775.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_11g482483v5

.
ath-u.5
for
AT3G46960

.
gma-u.5
for
100788432

.
sly-u.5
for
101264125

.
osa-u.5
for
4328375

.
zma-u.5
for
100383871

.
vvi-u.5
for
100253599

.
ppo-u.5
for
7468590

.
mtr-u.5
for
25490766

.


Ortholog ID: 11331
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G46960 LOC100788432 LOC101264125 LOC4328375 LOC100383871 LOC103873280 LOC100253599 LOC7468590 LOC25490766 LOC123136414 LOC123132362 LOC123404187 LOC121215524 LOC107950212 LOC106347561 LOC106352753 CHLRE_11g482483v5 LOC8076091 LOC102593100 LOC102630388 LOC100836649 LOC107804228 LOC107829143
Function* RNA helicase, ATP-dependent, SK12/DOB1 protein DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 uncharacterized LOC100383871 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11-like uncharacterized protein DExH-box ATP-dependent RNA helicase DExH11 ATP-dependent RNA helicase SKI2 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11 DExH-box ATP-dependent RNA helicase DExH11
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03082 ATP-dependent chromatin remodeling 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03018 RNA degradation 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi03018 RNA degradation 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03013 Nucleocytoplasmic transport 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 6
cit03013 Nucleocytoplasmic transport 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 3
nta03018 RNA degradation 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 3
nta03018 RNA degradation 2
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823849 100788432 101264125 4328375 100383871 103873280 100253599 7468590 25490766 123136414 123132362 123404187 121215524 107950212 106347561 106352753 66055372 8076091 102593100 102630388 100836649 107804228 107829143
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