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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g744947v5   uncharacterized protein 
 ath-u.5   AT4G38020   tRNA/rRNA methyltransferase (SpoU) family protein 
 gma-u.5   100792782   uncharacterized LOC100792782 
 sly-u.5   101251838   uncharacterized LOC101251838 
 osa-u.5   4333747   uncharacterized LOC4333747 
 zma-u.5   100193597   spoU rRNA Methylase family protein 
 vvi-u.5   100259536   uncharacterized LOC100259536 
 ppo-u.5   7476427   uncharacterized LOC7476427 
 mtr-u.5   11441513   uncharacterized tRNA/rRNA methyltransferase slr1673 

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Top 50 coexpressed genes to CHLRE_17g744947v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g744947v5 (cre-r.1 coexpression data)

CoexMap"66057209"


creCHLRE_17g744947v5 | Entrez gene ID : 66057209    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006396 [list] [network] RNA processing  (507 genes)  IEA  
GO CC
GO MF
GO:0008173 [list] [network] RNA methyltransferase activity  (41 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042915185.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_042915185.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_042915185.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g744947v5

.
ath-u.5
for
AT4G38020

.
gma-u.5
for
100792782

.
sly-u.5
for
101251838

.
osa-u.5
for
4333747

.
zma-u.5
for
100193597

.
vvi-u.5
for
100259536

.
ppo-u.5
for
7476427

.
mtr-u.5
for
11441513

.


Ortholog ID: 11387
Species ath gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta
Symbol AT4G38020 LOC100792782 LOC101251838 LOC4333747 LOC100193597 LOC103856150 LOC100259536 LOC7476427 LOC11441513 LOC123090700 LOC123447173 LOC107913380 LOC107897530 LOC106439583 LOC106436073 CHLRE_17g744947v5 LOC8054161 LOC102597650 LOC102619635 LOC100826405 LOC107772732
Function* tRNA/rRNA methyltransferase (SpoU) family protein uncharacterized LOC100792782 uncharacterized LOC101251838 uncharacterized LOC4333747 spoU rRNA Methylase family protein uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized LOC100259536 uncharacterized LOC7476427 uncharacterized tRNA/rRNA methyltransferase slr1673 uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized tRNA/rRNA methyltransferase YsgA-like uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized protein uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized LOC102619635 uncharacterized tRNA/rRNA methyltransferase YsgA uncharacterized LOC107772732
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00785 Lipoic acid metabolism 3
ppo01240 Biosynthesis of cofactors 3
ppo00061 Fatty acid biosynthesis 3
ppo01212 Fatty acid metabolism 3
ppo00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 4
bna00290 Valine, leucine and isoleucine biosynthesis 2
bna00650 Butanoate metabolism 2
bna00660 C5-Branched dibasic acid metabolism 2
bna00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 3
bna00290 Valine, leucine and isoleucine biosynthesis 2
bna00650 Butanoate metabolism 2
bna00660 C5-Branched dibasic acid metabolism 2
bna00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00340 Histidine metabolism 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829958 100792782 101251838 4333747 100193597 103856150 100259536 7476427 11441513 123090700 123447173 107913380 107897530 106439583 106436073 66057209 8054161 102597650 102619635 100826405 107772732
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