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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   732777   bHLH transcription factor PTF1 
 zma-r.6   732777   bHLH transcription factor PTF1 
 zma-m.5   732777   bHLH transcription factor PTF1 
 zma-u.5   100192577   uncharacterized LOC100192577 
 zma-u.5   103627314   putative HLH DNA-binding domain superfamily protein 
 osa-u.5   4329698   bHLH transcription factor RHL1 
 osa-u.5   4340382   transcription factor LRL3 
 vvi-u.5   100257707   uncharacterized LOC100257707 
 ppo-u.5   18100273   uncharacterized LOC18100273 

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Top 50 coexpressed genes to 732777 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 732777 (zma-u.5 coexpression data)

CoexMap"732777"


zmaLOC732777 | Entrez gene ID : 732777      
Species zma osa vvi ppo sly sbi nta mtr cre bra cit hvu bdi sot tae ath bna ghi gma
Paralog 5 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (427 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (169 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (224 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
Protein NP_001105867.1 [sequence] [blastp]
XP_008659041.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  golg 1  (predict for NP_001105867.1)
nucl 8,  chlo 1  (predict for XP_008659041.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001105867.1)
other 8  (predict for XP_008659041.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
732777

.
zma-r.6
for
732777

.
zma-m.5
for
732777

.
zma-u.5
for
100192577

.
zma-u.5
for
103627314

.
osa-u.5
for
4329698

.
osa-u.5
for
4340382

.
vvi-u.5
for
100257707

.
ppo-u.5
for
18100273

.


Ortholog ID: 12325
Species osa osa zma zma vvi ppo tae tae hvu ghi ghi sbi sbi cit bdi bdi
Symbol LOC4340382 LOC4329698 LOC103627314 LOC100192577 LOC100257707 LOC18100273 LOC123156746 LOC123149136 LOC123408356 LOC107907072 LOC107929883 LOC110434329 LOC8065450 LOC102611966 LOC100841109 LOC100834217
Function* transcription factor LRL3 bHLH transcription factor RHL1 putative HLH DNA-binding domain superfamily protein uncharacterized LOC100192577 uncharacterized LOC100257707 uncharacterized LOC18100273 transcription factor bHLH7 transcription factor UNE12 transcription factor bHLH110-like uncharacterized LOC107907072 transcription factor LRL1 uncharacterized LOC110434329 transcription factor bHLH66 hypothetical protein uncharacterized LOC100841109 uncharacterized LOC100834217
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 7
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 5
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4340382 4329698 103627314 100192577 100257707 18100273 123156746 123149136 123408356 107907072 107929883 110434329 8065450 102611966 100841109 100834217
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