ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7458275	eukaryotic translation initiation factor 1A
ppo-r.4	7458275	eukaryotic translation initiation factor 1A
ppo-m.4	7458275	eukaryotic translation initiation factor 1A
ppo-u.5	7468539	eukaryotic translation initiation factor 1A
gma-u.5	100818207	eukaryotic translation initiation factor 1A
gma-u.5	100780794	eukaryotic translation initiation factor 1A
gma-u.5	100777129	eukaryotic translation initiation factor 1A
mtr-u.5	25500774	eukaryotic translation initiation factor 1A
mtr-u.5	11417783	eukaryotic translation initiation factor 1A
ath-u.5	AT2G04520	Nucleic acid-binding, OB-fold-like protein
ath-u.5	AT5G35680	Nucleic acid-binding, OB-fold-like protein
bra-r.6	103860302	eukaryotic translation initiation factor 1A
vvi-u.5	100263709	eukaryotic translation initiation factor 1A
vvi-u.5	100252402	eukaryotic translation initiation factor 1A
ghi-r.1	121224120	eukaryotic translation initiation factor 1A
ghi-r.1	107900933	eukaryotic translation initiation factor 1A
ghi-r.1	107912617	eukaryotic translation initiation factor 1A
bna-r.1	106361826	eukaryotic translation initiation factor 1A
bna-r.1	106357786	eukaryotic translation initiation factor 1A
cit-r.1	102631211	eukaryotic translation initiation factor 1A
cit-r.1	127901042	eukaryotic translation initiation factor 1A-like
cit-r.1	102627510	eukaryotic translation initiation factor 1A
sly-u.5	101253491	eukaryotic translation initiation factor 1A
sly-u.5	101248917	S1-like RNA-binding domain-containing protein
sot-r.1	102595476	eukaryotic translation initiation factor 1A-like
sot-r.1	102595704	eukaryotic translation initiation factor 1A-like
sot-r.1	102580273	eukaryotic translation initiation factor 1A-like
nta-r.1	107820365	eukaryotic translation initiation factor 1A
nta-r.1	107818117	eukaryotic translation initiation factor 1A-like
nta-r.1	107808437	eukaryotic translation initiation factor 1A-like
osa-u.5	4329091	eukaryotic translation initiation factor 1A
zma-u.5	107548100	Nucleic acid-binding OB-fold-like protein
zma-u.5	100282617	eukaryotic translation initiation factor 1A
zma-u.5	100273317	uncharacterized LOC100273317
tae-r.2	123147738	eukaryotic translation initiation factor 1A-like
tae-r.2	123157289	eukaryotic translation initiation factor 1A-like
tae-r.2	123166543	eukaryotic translation initiation factor 1A
hvu-r.1	123410078	eukaryotic translation initiation factor 1A
sbi-r.1	8070729	eukaryotic translation initiation factor 1A
sbi-r.1	8077775	eukaryotic translation initiation factor 1A
bdi-r.1	100840401	eukaryotic translation initiation factor 1A
cre-r.1	CHLRE_02g103550v5	uncharacterized protein

Top 50 coexpressed genes to 7458275 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7458275 (ppo-u.5 coexpression data)

CoexMap"7458275"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006413 [list] [network] translational initiation

(64 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(6111 genes)

IEA

GO MF

GO:0003743 [list] [network] translation initiation factor activity	(90 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1480 genes)	IEA

Protein

XP_002302848.1 [sequence] [blastp]
XP_024450226.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, mito 1, extr 1, cysk_nucl 1, nucl_plas 1	(predict for XP_002302848.1)
cyto 4, nucl 3, mito 1, extr 1, cysk_nucl 1, nucl_plas 1	(predict for XP_024450226.1)

Subcellular
localization
TargetP

other 9	(predict for XP_002302848.1)
other 9	(predict for XP_024450226.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7458275	ppo-r.4 for 7458275	ppo-m.4 for 7458275	ppo-u.5 for 7468539	gma-u.5 for 100818207	gma-u.5 for 100780794	gma-u.5 for 100777129	mtr-u.5 for 25500774	mtr-u.5 for 11417783	ath-u.5 for AT2G04520	ath-u.5 for AT5G35680	bra-r.6 for 103860302	vvi-u.5 for 100263709	vvi-u.5 for 100252402	ghi-r.1 for 121224120	ghi-r.1 for 107900933	ghi-r.1 for 107912617	bna-r.1 for 106361826	bna-r.1 for 106357786	cit-r.1 for 102631211	cit-r.1 for 127901042	cit-r.1 for 102627510	sly-u.5 for 101253491	sly-u.5 for 101248917	sot-r.1 for 102595476	sot-r.1 for 102595704	sot-r.1 for 102580273	nta-r.1 for 107820365	nta-r.1 for 107818117	nta-r.1 for 107808437	osa-u.5 for 4329091	zma-u.5 for 107548100	zma-u.5 for 100282617	zma-u.5 for 100273317	tae-r.2 for 123147738	tae-r.2 for 123157289	tae-r.2 for 123166543	hvu-r.1 for 123410078	sbi-r.1 for 8070729	sbi-r.1 for 8077775	bdi-r.1 for 100840401	cre-r.1 for CHLRE_02g103550v5

Ortholog

Ortholog ID: 1832

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*