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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7464642   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 gma-u.5   100804411   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 mtr-u.5   11425849   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 ath-u.5   AT2G42920   Pentatricopeptide repeat (PPR-like) superfamily protein 
 vvi-u.5   100248849   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 sly-u.5   101259507   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 osa-u.5   107276234   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 

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Top 50 coexpressed genes to 7464642 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7464642 (ppo-m.4 coexpression data)

CoexMap"7464642"


ppoLOC7464642 | Entrez gene ID : 7464642    
Species ppo gma mtr ath vvi sly osa sbi nta bra cre hvu cit bdi sot zma tae bna ghi
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002306741.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cyto 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_002306741.2)
Subcellular
localization
TargetP
other 6,  scret 3  (predict for XP_002306741.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7464642

.
gma-u.5
for
100804411

.
mtr-u.5
for
11425849

.
ath-u.5
for
AT2G42920

.
vvi-u.5
for
100248849

.
sly-u.5
for
101259507

.
osa-u.5
for
107276234

.


Ortholog ID: 11273
Species ath gma sly osa bra vvi mtr hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT2G42920 LOC100804411 LOC101259507 LOC107276234 LOC103866680 LOC100248849 LOC11425849 LOC123452142 LOC107911720 LOC107922768 LOC125585033 LOC106377416 LOC8062242 LOC102604439 LOC102608650 LOC100839173 LOC107799613 LOC142162882
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00010 Glycolysis / Gluconeogenesis 2
gma01200 Carbon metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi00920 Sulfur metabolism 3
sbi01320 Sulfur cycle 3
sbi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00710 Carbon fixation by Calvin cycle 2
cit01230 Biosynthesis of amino acids 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818893 100804411 101259507 107276234 103866680 100248849 11425849 123452142 107911720 107922768 125585033 106377416 8062242 102604439 102608650 100839173 107799613 142162882
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