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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7465997   preprotein translocase subunit SCY1, chloroplastic 
 ppo-r.4   7465997   preprotein translocase subunit SCY1, chloroplastic 
 ppo-u.5   7493346   preprotein translocase subunit SCY1, chloroplastic 
 gma-u.5   100810430   preprotein translocase subunit SECY, chloroplastic 
 mtr-u.5   25488366   preprotein translocase subunit SECY, chloroplastic 
 ath-u.5   SCY1   SECY homolog 1 
 vvi-u.5   100248517   preprotein translocase subunit SECY, chloroplastic 
 sly-u.5   101263722   preprotein translocase subunit SCY1, chloroplastic 
 osa-u.5   4345097   preprotein translocase subunit SECY, chloroplastic-like 
 zma-u.5   542482   Chloroplast SecY-1 

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Top 50 coexpressed genes to 7465997 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7465997 (ppo-u.5 coexpression data)

CoexMap"7465997"


ppoLOC7465997 | Entrez gene ID : 7465997    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03060 [list] [network] Protein export (78 genes)
pop04141 [list] [network] Protein processing in endoplasmic reticulum (286 genes)
pop04145 [list] [network] Phagosome (117 genes)
GO BP
GO:0006616 [list] [network] SRP-dependent cotranslational protein targeting to membrane, translocation  (9 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (105 genes)  IEA  
GO MF
GO:0008320 [list] [network] protein transmembrane transporter activity  (38 genes)  IEA  
GO:0005048 [list] [network] signal sequence binding  (65 genes)  IEA  
Protein XP_002309386.2 [sequence] [blastp]
XP_024458308.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  vacu 1,  E.R. 1,  golg 1,  E.R._vacu 1  (predict for XP_002309386.2)
chlo 7,  mito 1,  vacu 1,  E.R. 1,  golg 1,  E.R._vacu 1  (predict for XP_024458308.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002309386.2)
chlo 9  (predict for XP_024458308.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7465997

.
ppo-r.4
for
7465997

.
ppo-u.5
for
7493346

.
gma-u.5
for
100810430

.
mtr-u.5
for
25488366

.
ath-u.5
for
SCY1

.
vvi-u.5
for
100248517

.
sly-u.5
for
101263722

.
osa-u.5
for
4345097

.
zma-u.5
for
542482

.


Ortholog ID: 9988
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SCY1 LOC100810430 LOC101263722 LOC4345097 LOC542482 LOC103828373 LOC100248517 LOC7465997 LOC7493346 LOC25488366 LOC123111470 LOC123103281 LOC123399075 LOC107941416 LOC107907467 LOC111215907 LOC106357637 CHLRE_16g681900v5 LOC8082432 LOC102585784 LOC102616382 LOC100830957 LOC107774575 LOC107788151
Function* SECY homolog 1 preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SECY, chloroplastic-like Chloroplast SecY-1 preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SCY1, chloroplastic uncharacterized protein preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SCY1, chloroplastic preprotein translocase subunit SECY, chloroplastic preprotein translocase subunit SCY1, chloroplastic-like preprotein translocase subunit SCY1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 4
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 3
zma03060 Protein export 2
zma00230 Purine metabolism 2
zma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03060 Protein export 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae00561 Glycerolipid metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae00561 Glycerolipid metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 4
ghi03060 Protein export 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 4
ghi03060 Protein export 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre01230 Biosynthesis of amino acids 2
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00860 Porphyrin metabolism 2
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816386 100810430 101263722 4345097 542482 103828373 100248517 7465997 7493346 25488366 123111470 123103281 123399075 107941416 107907467 111215907 106357637 5717564 8082432 102585784 102616382 100830957 107774575 107788151
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