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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7466898   homocysteine S-methyltransferase 1 
 ppo-r.4   7466898   homocysteine S-methyltransferase 1 
 ppo-m.4   7466898   homocysteine S-methyltransferase 1 
 ppo-u.5   7480020   homocysteine S-methyltransferase 2 
 ppo-u.5   7467500   homocysteine S-methyltransferase 3 
 ppo-u.5   7464849   homocysteine S-methyltransferase 2 
 gma-u.5   100811127   homocysteine S-methyltransferase 3-like 
 gma-u.5   100790567   selenocysteine methyltransferase 
 gma-u.5   100812265   homocysteine S-methyltransferase 1 
 mtr-u.5   11422561   homocysteine S-methyltransferase 1 
 mtr-u.5   25499146   selenocysteine methyltransferase 
 mtr-u.5   25485172   homocysteine S-methyltransferase 3 
 ath-u.5   HMT-1   Homocysteine S-methyltransferase family protein 
 ath-u.5   HMT3   homocysteine S-methyltransferase 3 
 ath-u.5   HMT2   homocysteine methyltransferase 2 
 vvi-u.5   100264835   homocysteine S-methyltransferase 3 
 vvi-u.5   100852835   homocysteine S-methyltransferase 2 
 vvi-u.5   100247323   homocysteine S-methyltransferase 1 
 sly-u.5   101262954   homocysteine S-methyltransferase 2 
 sly-u.5   101251816   homocysteine S-methyltransferase 2 
 osa-u.5   4348656   homocysteine S-methyltransferase 2 
 osa-u.5   4352747   homocysteine S-methyltransferase 2 
 osa-u.5   4332095   homocysteine S-methyltransferase 1 
 zma-u.5   541873   homocysteine S-methyltransferase 1 
 zma-u.5   541876   homocysteine S-methyltransferase 4 

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Top 50 coexpressed genes to 7466898 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7466898 (ppo-u.5 coexpression data)

CoexMap"7466898"


ppoLOC7466898 | Entrez gene ID : 7466898    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00270 [list] [network] Cysteine and methionine metabolism (144 genes)
pop00670 [list] [network] One carbon pool by folate (51 genes)
pop04981 [list] [network] Folate transport and metabolism (58 genes)
GO BP
GO:0033528 [list] [network] S-methylmethionine cycle  (5 genes)  IEA  
GO:0009086 [list] [network] methionine biosynthetic process  (23 genes)  IEA  
GO CC
GO MF
GO:0008898 [list] [network] S-adenosylmethionine-homocysteine S-methyltransferase activity  (5 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
Protein XP_002315941.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  pero 1,  golg 1,  E.R._vacu 1  (predict for XP_002315941.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002315941.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7466898

.
ppo-r.4
for
7466898

.
ppo-m.4
for
7466898

.
ppo-u.5
for
7480020

.
ppo-u.5
for
7467500

.
ppo-u.5
for
7464849

.
gma-u.5
for
100811127

.
gma-u.5
for
100790567

.
gma-u.5
for
100812265

.
mtr-u.5
for
11422561

.
mtr-u.5
for
25499146

.
mtr-u.5
for
25485172

.
ath-u.5
for
HMT-1

.
ath-u.5
for
HMT3

.
ath-u.5
for
HMT2

.
vvi-u.5
for
100264835

.
vvi-u.5
for
100852835

.
vvi-u.5
for
100247323

.
sly-u.5
for
101262954

.
sly-u.5
for
101251816

.
osa-u.5
for
4348656

.
osa-u.5
for
4352747

.
osa-u.5
for
4332095

.
zma-u.5
for
541873

.
zma-u.5
for
541876

.


Ortholog ID: 1543
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi cre sbi sot sot cit cit bdi bdi nta nta
Symbol HMT3 HMT2 LOC100790567 LOC100811127 LOC101262954 LOC101251816 LOC4332095 LOC541873 LOC541874 LOC103875335 LOC103842126 LOC100247323 LOC100852835 LOC7474182 LOC7464849 LOC25499146 LOC11422561 LOC123074822 LOC123102264 LOC123449286 LOC107951360 LOC107914791 CHLRE_10g455650v5 LOC8056874 LOC102595885 LOC102595383 LOC102614076 LOC102628438 LOC100838685 LOC100841399 LOC107831596 LOC107796068
Function* homocysteine S-methyltransferase 3 homocysteine methyltransferase 2 selenocysteine methyltransferase homocysteine S-methyltransferase 3-like homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase-2 homocysteine S-methyltransferase 1 selenocysteine Se-methyltransferase-like homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 3 homocysteine S-methyltransferase 2 selenocysteine methyltransferase homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 4 homocysteine S-methyltransferase 3 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2 uncharacterized protein homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2-like homocysteine S-methyltransferase 1 selenocysteine methyltransferase homocysteine S-methyltransferase 4 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01210 2-Oxocarboxylic acid metabolism 10
ath00966 Glucosinolate biosynthesis 8
ath00290 Valine, leucine and isoleucine biosynthesis 3
ath00270 Cysteine and methionine metabolism 3
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 3
gma00920 Sulfur metabolism 3
gma00270 Cysteine and methionine metabolism 3
gma01240 Biosynthesis of cofactors 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01230 Biosynthesis of amino acids 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 8
osa01230 Biosynthesis of amino acids 6
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
osa00360 Phenylalanine metabolism 4
osa00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00920 Sulfur metabolism 4
zma00270 Cysteine and methionine metabolism 3
zma00670 One carbon pool by folate 2
zma01230 Biosynthesis of amino acids 2
zma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 6
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 3
vvi00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
vvi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00670 One carbon pool by folate 3
ppo00270 Cysteine and methionine metabolism 2
ppo04981 Folate transport and metabolism 2
ppo00920 Sulfur metabolism 2
ppo01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 10
mtr00670 One carbon pool by folate 7
mtr00270 Cysteine and methionine metabolism 6
mtr01240 Biosynthesis of cofactors 4
mtr01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00670 One carbon pool by folate 3
tae04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae04075 Plant hormone signal transduction 4
tae00270 Cysteine and methionine metabolism 3
tae00670 One carbon pool by folate 3
tae04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu04130 SNARE interactions in vesicular transport 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
ghi04981 Folate transport and metabolism 2
ghi00052 Galactose metabolism 2
ghi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
ghi04981 Folate transport and metabolism 2
ghi00052 Galactose metabolism 2
ghi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00270 Cysteine and methionine metabolism 4
sbi00940 Phenylpropanoid biosynthesis 3
sbi00941 Flavonoid biosynthesis 3
sbi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 2
sot03010 Ribosome 2
sot04141 Protein processing in endoplasmic reticulum 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 7
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00270 Cysteine and methionine metabolism 3
cit00670 One carbon pool by folate 2
cit04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 5
bdi04626 Plant-pathogen interaction 5
bdi04981 Folate transport and metabolism 3
bdi00592 alpha-Linolenic acid metabolism 2
bdi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00270 Cysteine and methionine metabolism 2
nta00670 One carbon pool by folate 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00670 One carbon pool by folate 2
nta04981 Folate transport and metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821845 825500 100790567 100811127 101262954 101251816 4332095 541873 541874 103875335 103842126 100247323 100852835 7474182 7464849 25499146 11422561 123074822 123102264 123449286 107951360 107914791 66055113 8056874 102595885 102595383 102614076 102628438 100838685 100841399 107831596 107796068
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