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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7475720   periodic tryptophan protein 2 
 ppo-r.4   7475720   periodic tryptophan protein 2 
 ppo-u.5   7478120   periodic tryptophan protein 2 
 gma-u.5   100793629   periodic tryptophan protein 2 
 gma-u.5   100526905   periodic tryptophan protein 2 
 mtr-u.5   11431644   periodic tryptophan protein 2 
 ath-u.5   PWP2   periodic tryptophan protein 2 
 vvi-u.5   100241131   periodic tryptophan protein 2 
 sly-u.5   101252265   periodic tryptophan protein 2 
 osa-u.5   4339341   periodic tryptophan protein 2 
 zma-u.5   100191510   periodic tryptophan protein 2 

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Top 50 coexpressed genes to 7475720 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7475720 (ppo-u.5 coexpression data)

CoexMap"7475720"


ppoLOC7475720 | Entrez gene ID : 7475720    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03008 [list] [network] Ribosome biogenesis in eukaryotes (334 genes)
GO BP
GO:0000028 [list] [network] ribosomal small subunit assembly  (34 genes)  IEA  
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (43 genes)  IEA  
GO CC
GO:0034388 [list] [network] Pwp2p-containing subcomplex of 90S preribosome  (6 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (53 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002304160.3 [sequence] [blastp]
XP_052307528.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002304160.3)
chlo 10  (predict for XP_052307528.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_002304160.3)
mito 7  (predict for XP_052307528.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7475720

.
ppo-r.4
for
7475720

.
ppo-u.5
for
7478120

.
gma-u.5
for
100793629

.
gma-u.5
for
100526905

.
mtr-u.5
for
11431644

.
ath-u.5
for
PWP2

.
vvi-u.5
for
100241131

.
sly-u.5
for
101252265

.
osa-u.5
for
4339341

.
zma-u.5
for
100191510

.


Ortholog ID: 8235
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PWP2 LOC100793629 LOC100526905 LOC101252265 LOC4339341 LOC100191510 LOC103872338 LOC103836025 LOC100241131 LOC7475720 LOC7478120 LOC11431644 LOC123182659 LOC123140460 LOC123450046 LOC121206106 LOC107891682 LOC106452315 LOC106387562 CHLRE_06g254150v5 LOC8082990 LOC102587545 LOC102614962 LOC100826227 LOC107832193 LOC107769830
Function* periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 uncharacterized protein periodic tryptophan protein 2 homolog periodic tryptophan protein 2 homolog periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2 periodic tryptophan protein 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03013 Nucleocytoplasmic transport 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 11
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838115 100793629 100526905 101252265 4339341 100191510 103872338 103836025 100241131 7475720 7478120 11431644 123182659 123140460 123450046 121206106 107891682 106452315 106387562 5722149 8082990 102587545 102614962 100826227 107832193 107769830
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