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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7475723   (6-4)DNA photolyase 
 ppo-r.4   7475723   (6-4)DNA photolyase 
 ppo-m.4   7475723   (6-4)DNA photolyase 
 gma-u.5   100780347   (6-4)DNA photolyase 
 mtr-u.5   25491344   (6-4)DNA photolyase 
 ath-u.5   UVR3   DNA photolyase family protein 
 vvi-u.5   100256713   (6-4)DNA photolyase 
 sly-u.5   101262697   (6-4)DNA photolyase 
 osa-u.5   4328669   (6-4)DNA photolyase 
 zma-u.5   100280217   uncharacterized LOC100280217 

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Top 50 coexpressed genes to 7475723 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7475723 (ppo-u.5 coexpression data)

CoexMap"7475723"


ppoLOC7475723 | Entrez gene ID : 7475723    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032922 [list] [network] circadian regulation of gene expression  (4 genes)  IEA  
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod  (4 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0071949 [list] [network] FAD binding  (109 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
Protein XP_024452973.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  mito 1  (predict for XP_024452973.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_024452973.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7475723

.
ppo-r.4
for
7475723

.
ppo-m.4
for
7475723

.
gma-u.5
for
100780347

.
mtr-u.5
for
25491344

.
ath-u.5
for
UVR3

.
vvi-u.5
for
100256713

.
sly-u.5
for
101262697

.
osa-u.5
for
4328669

.
zma-u.5
for
100280217

.


Ortholog ID: 11303
Species ath gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol UVR3 LOC100780347 LOC101262697 LOC4328669 LOC100280217 LOC103840624 LOC100256713 LOC7475723 LOC25491344 LOC123144349 LOC123402574 LOC107901744 LOC107962174 LOC106349575 LOC106387503 CHLRE_06g278251v5 LOC8082933 LOC102605735 LOC102617013 LOC100823069 LOC107773193 LOC107790260
Function* DNA photolyase family protein (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase uncharacterized LOC100280217 (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase-like (6-4)DNA photolyase uncharacterized protein (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot00941 Flavonoid biosynthesis 2
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820804 100780347 101262697 4328669 100280217 103840624 100256713 7475723 25491344 123144349 123402574 107901744 107962174 106349575 106387503 5723611 8082933 102605735 102617013 100823069 107773193 107790260
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