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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7481585   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 gma-u.5   100817794   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 mtr-u.5   11417569   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 ath-u.5   OTP85   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100261911   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 sly-u.5   101267992   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 osa-u.5   4334412   pentatricopeptide repeat-containing protein At2g02980, chloroplastic 
 zma-u.5   100191499   Pentatricopeptide repeat-containing protein chloroplastic 

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Top 50 coexpressed genes to 7481585 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7481585 (ppo-m.4 coexpression data)

CoexMap"7481585"


ppoLOC7481585 | Entrez gene ID : 7481585    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002316137.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 1,  extr 1,  vacu 1,  mito 1,  plas 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1,  E.R._plas 1,  mito_plas 1  (predict for XP_002316137.2)
Subcellular
localization
TargetP
chlo 6  (predict for XP_002316137.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7481585

.
gma-u.5
for
100817794

.
mtr-u.5
for
11417569

.
ath-u.5
for
OTP85

.
vvi-u.5
for
100261911

.
sly-u.5
for
101267992

.
osa-u.5
for
4334412

.
zma-u.5
for
100191499

.


Ortholog ID: 11229
Species ath gma sly osa zma bra vvi mtr tae tae hvu ghi bna bna sbi sot cit bdi nta nta
Symbol OTP85 LOC100817794 LOC101267992 LOC4334412 LOC100191499 LOC103853967 LOC100261911 LOC11417569 LOC123105385 LOC123113656 LOC123398817 LOC107920547 LOC111203333 LOC125596212 LOC8061176 LOC102588903 LOC102615621 LOC100842371 LOC107802969 LOC107771122
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu01240 Biosynthesis of cofactors 2
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814827 100817794 101267992 4334412 100191499 103853967 100261911 11417569 123105385 123113656 123398817 107920547 111203333 125596212 8061176 102588903 102615621 100842371 107802969 107771122
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