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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7482195   MADS-box protein FBP24 
 mtr-u.5   11433884   protein TRANSPARENT TESTA 16 
 bra-r.6   103854906   protein TRANSPARENT TESTA 16-like 
 bra-r.6   103865402   protein TRANSPARENT TESTA 16 
 ghi-r.1   121228230   protein TRANSPARENT TESTA 16 
 ghi-r.1   107918783   protein TRANSPARENT TESTA 16-like 
 ghi-r.1   107898867   protein TRANSPARENT TESTA 16-like 
 bna-r.1   125607076   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106359505   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106444269   protein TRANSPARENT TESTA 16 
 cit-r.1   102614986   MADS-box protein defh21-like 
 osa-u.5   4336981   MADS-box transcription factor 31-like 
 tae-r.2   123141355   MADS-box transcription factor 29 
 bdi-r.1   100822441   MADS-box transcription factor 29-like 

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Top 50 coexpressed genes to 7482195 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7482195 (ppo-m.4 coexpression data)

CoexMap"7482195"


ppoLOC7482195 | Entrez gene ID : 7482195    
Species ppo mtr bra ghi bna cit osa tae bdi hvu sbi vvi sly zma cre ath nta sot gma
Paralog 1 1 2 3 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (159 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (266 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (338 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (520 genes)  IEA  
Protein XP_002318890.2 [sequence] [blastp]
XP_052302044.1 [sequence] [blastp]
XP_052302045.1 [sequence] [blastp]
XP_052302046.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  mito 2,  chlo 1,  plas 1  (predict for XP_002318890.2)
nucl 4,  mito 2,  cyto_nucl 2,  chlo 2,  cyto_mito 1  (predict for XP_052302044.1)
nucl 4,  mito 3,  cyto_nucl 2,  cyto_mito 2,  chlo 1  (predict for XP_052302045.1)
nucl 8,  chlo 1,  mito 1,  chlo_mito 1,  golg_plas 1  (predict for XP_052302046.1)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for XP_002318890.2)
other 6,  mito 5  (predict for XP_052302044.1)
other 6,  mito 4  (predict for XP_052302045.1)
other 6,  mito 5  (predict for XP_052302046.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7482195
mtr-u.5
for
11433884
bra-r.6
for
103854906
bra-r.6
for
103865402
ghi-r.1
for
121228230
ghi-r.1
for
107918783
ghi-r.1
for
107898867
bna-r.1
for
125607076
bna-r.1
for
106359505
bna-r.1
for
106444269
cit-r.1
for
102614986
osa-u.5
for
4336981
tae-r.2
for
123141355
bdi-r.1
for
100822441


Ortholog ID: 3264
Species mtr bra bra ghi ghi ghi bna bna bna cit osa tae bdi
Symbol LOC11433884 LOC103854906 LOC103865402 LOC121228230 LOC107918783 LOC107894052 LOC106366053 LOC106380103 LOC106425709 LOC102614986 LOC4336981 LOC780650 LOC100822441
Function* protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like MADS-box protein defh21-like MADS-box transcription factor 31-like MADS-box transcription factor 29 MADS-box transcription factor 29-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00053 Ascorbate and aldarate metabolism 2
osa00480 Glutathione metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11433884 103854906 103865402 121228230 107918783 107894052 106366053 106380103 106425709 102614986 4336981 780650 100822441
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