ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-m.4	7488853	RNA-binding protein 1
ppo-u.5	7472638	RNA-binding protein 1
gma-u.5	100816822	RNA-binding protein 1
gma-u.5	100786665	RNA-binding protein 1
mtr-u.5	25489991	heterogeneous nuclear ribonucleoprotein 1
ath-u.5	RBP1	RNA-binding protein 1
vvi-u.5	100255821	uncharacterized LOC100255821
sly-u.5	101254896	RNA-binding protein 1
osa-u.5	4342307	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	103631917	DAZ-associated protein 1
zma-u.5	100192067	Ribonucleoprotein like protein

functional annotation

KEGG

pop03015 [list] [network] mRNA surveillance pathway (164 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1480 genes)

IEA

Protein

XP_052302969.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, mito 2, cyto 1, pero 1, cyto_pero 1

(predict for XP_052302969.1)

Subcellular
localization
TargetP

other 9

(predict for XP_052302969.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7488853	ppo-u.5 for 7472638	gma-u.5 for 100816822	gma-u.5 for 100786665	mtr-u.5 for 25489991	ath-u.5 for RBP1	vvi-u.5 for 100255821	sly-u.5 for 101254896	osa-u.5 for 4342307	zma-u.5 for 103631917	zma-u.5 for 100192067

Ortholog ID: 8285

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RBP1

Function^*

RNA-binding protein 1

heterogeneous nuclear ribonucleoprotein 1

RNA-binding protein 1

uncharacterized LOC100255821

RNA-binding protein 1

RNA-binding protein 1-like

RNA-binding protein 1

RNA-binding protein 1-like

RNA-binding protein 1

heterogeneous nuclear ribonucleoprotein 1

DAZ-associated protein 1

Ribonucleoprotein like protein

RNA-binding protein 1

heterogeneous nuclear ribonucleoprotein 1-like

heterogeneous nuclear ribonucleoprotein 1

RNA-binding protein 3

heterogeneous nuclear ribonucleoprotein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	6
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	6
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4
sly03040	Spliceosome	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00600	Sphingolipid metabolism	2
zma04382	Cornified envelope formation	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	6
tae03015	mRNA surveillance pathway	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04626	Plant-pathogen interaction	3
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

7472638

100816822

25489991

842216

103838609

100255821

121218187

107930589

106366596

111211184

101254896

102582431

107803798

107791027

4342307

103631917

100192067

123052903

123188907

123426305

8084305

8084186

100846266

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7488853 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7488853 (ppo-m.4 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	2	1	1	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7488853 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7488853 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**