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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7492297   50S ribosomal protein L4, chloroplastic 
 ppo-r.4   7492297   50S ribosomal protein L4, chloroplastic 
 ppo-m.4   7492297   50S ribosomal protein L4, chloroplastic 
 gma-u.5   100803701   50S ribosomal protein L4, chloroplastic 
 gma-u.5   100790380   50S ribosomal protein L4, chloroplastic 
 mtr-u.5   25500064   50S ribosomal protein L4, chloroplastic 
 ath-u.5   RPL4   ribosomal protein L4 
 vvi-u.5   104879610   large ribosomal subunit protein uL4c 
 sly-u.5   101254712   large ribosomal subunit protein uL4c 
 osa-u.5   4332348   large ribosomal subunit protein uL4c 
 zma-u.5   100283234   50S ribosomal protein L4-like 

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Top 50 coexpressed genes to 7492297 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7492297 (ppo-u.5 coexpression data)

CoexMap"7492297"


ppoLOC7492297 | Entrez gene ID : 7492297    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03010 [list] [network] Ribosome (698 genes)
GO BP
GO:0006412 [list] [network] translation  (598 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (453 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (439 genes)  IEA  
Protein XP_002309469.2 [sequence] [blastp]
XP_024458294.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  extr 1,  vacu 1  (predict for XP_002309469.2)
chlo 7,  nucl 1,  mito 1,  extr 1,  vacu 1  (predict for XP_024458294.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002309469.2)
chlo 8  (predict for XP_024458294.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7492297

.
ppo-r.4
for
7492297

.
ppo-m.4
for
7492297

.
gma-u.5
for
100803701

.
gma-u.5
for
100790380

.
mtr-u.5
for
25500064

.
ath-u.5
for
RPL4

.
vvi-u.5
for
104879610

.
sly-u.5
for
101254712

.
osa-u.5
for
4332348

.
zma-u.5
for
100283234

.


Ortholog ID: 9763
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RPL4 LOC100790380 LOC100803701 LOC101254712 LOC4332348 LOC100283234 LOC103843956 LOC104879610 LOC7492297 LOC25500064 LOC123085380 LOC123097964 LOC123449072 LOC107931938 LOC107932518 LOC125594915 LOC106391122 CHLRE_11g479500v5 LOC8078804 LOC102596426 LOC102612217 LOC100845528 LOC107828567 LOC107817573
Function* ribosomal protein L4 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic large ribosomal subunit protein uL4c large ribosomal subunit protein uL4c 50S ribosomal protein L4-like 50S ribosomal protein L4, chloroplastic large ribosomal subunit protein uL4c 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic uncharacterized protein 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic large ribosomal subunit protein uL4c-like 50S ribosomal protein L4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna00860 Porphyrin metabolism 4
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna00860 Porphyrin metabolism 4
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi01240 Biosynthesis of cofactors 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 16
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837243 100790380 100803701 101254712 4332348 100283234 103843956 104879610 7492297 25500064 123085380 123097964 123449072 107931938 107932518 125594915 106391122 5722911 8078804 102596426 102612217 100845528 107828567 107817573
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