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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RPL4   ribosomal protein L4 
 ath-r.7   RPL4   ribosomal protein L4 
 ath-m.9   RPL4   ribosomal protein L4 
 ath-e.2   RPL4   ribosomal protein L4 
 ath-m.4.bio   RPL4   ribosomal protein L4 
 ath-m.4.hor   RPL4   ribosomal protein L4 
 ath-m.4.lig   RPL4   ribosomal protein L4 
 ath-m.4.str   RPL4   ribosomal protein L4 
 ath-m.4.tis   RPL4   ribosomal protein L4 
 bra-r.6   103843956   50S ribosomal protein L4, chloroplastic 
 bna-r.1   106400920   50S ribosomal protein L4, chloroplastic 
 bna-r.1   106391122   50S ribosomal protein L4, chloroplastic 
 bna-r.1   125594915   50S ribosomal protein L4, chloroplastic 
 ghi-r.1   107932518   50S ribosomal protein L4, chloroplastic 
 ghi-r.1   107931938   50S ribosomal protein L4, chloroplastic 
 cit-r.1   102612217   50S ribosomal protein L4, chloroplastic 
 gma-u.5   100803701   50S ribosomal protein L4, chloroplastic 
 gma-u.5   100790380   50S ribosomal protein L4, chloroplastic 
 vvi-u.5   104879610   large ribosomal subunit protein uL4c 
 ppo-u.5   7492297   50S ribosomal protein L4, chloroplastic 
 mtr-u.5   25500064   50S ribosomal protein L4, chloroplastic 
 sly-u.5   101254712   large ribosomal subunit protein uL4c 
 sot-r.1   102596426   50S ribosomal protein L4, chloroplastic 
 nta-r.1   107817573   50S ribosomal protein L4, chloroplastic 
 nta-r.1   107828567   large ribosomal subunit protein uL4c-like 
 osa-u.5   4332348   large ribosomal subunit protein uL4c 
 zma-u.5   100283234   50S ribosomal protein L4-like 
 tae-r.2   123097964   50S ribosomal protein L4, chloroplastic 
 tae-r.2   123092659   50S ribosomal protein L4, chloroplastic 
 tae-r.2   123085380   50S ribosomal protein L4, chloroplastic 
 hvu-r.1   123449072   50S ribosomal protein L4, chloroplastic 
 sbi-r.1   8078804   50S ribosomal protein L4, chloroplastic 
 bdi-r.1   100845528   50S ribosomal protein L4, chloroplastic 
 cre-r.1   CHLRE_11g479500v5   uncharacterized protein 

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Top 50 coexpressed genes to RPL4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RPL4 (ath-u.5 coexpression data)

CoexMap"837243"


athRPL4 | Entrez gene ID : 837243      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA TAS  
GO CC
GO:0000311 [list] [network] plastid large ribosomal subunit  (6 genes)  TAS  
GO:0009547 [list] [network] plastid ribosome  (10 genes)  IDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0008266 [list] [network] poly(U) RNA binding  (19 genes)  IDA  
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001030985.1 [sequence] [blastp]
NP_001030986.1 [sequence] [blastp]
NP_563786.1 [sequence] [blastp]
NP_849604.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001030985.1)
chlo 10  (predict for NP_001030986.1)
chlo 10  (predict for NP_563786.1)
chlo 10  (predict for NP_849604.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001030985.1)
chlo 8  (predict for NP_001030986.1)
chlo 8  (predict for NP_563786.1)
chlo 8  (predict for NP_849604.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RPL4
ath-r.7
for
RPL4
ath-m.9
for
RPL4
ath-e.2
for
RPL4
ath-m.4.bio
for
RPL4
ath-m.4.hor
for
RPL4
ath-m.4.lig
for
RPL4
ath-m.4.str
for
RPL4
ath-m.4.tis
for
RPL4
bra-r.6
for
103843956
bna-r.1
for
106400920
bna-r.1
for
106391122
bna-r.1
for
125594915
ghi-r.1
for
107932518
ghi-r.1
for
107931938
cit-r.1
for
102612217
gma-u.5
for
100803701
gma-u.5
for
100790380
vvi-u.5
for
104879610
ppo-u.5
for
7492297
mtr-u.5
for
25500064
sly-u.5
for
101254712
sot-r.1
for
102596426
nta-r.1
for
107817573
nta-r.1
for
107828567
osa-u.5
for
4332348
zma-u.5
for
100283234
tae-r.2
for
123097964
tae-r.2
for
123092659
tae-r.2
for
123085380
hvu-r.1
for
123449072
sbi-r.1
for
8078804
bdi-r.1
for
100845528
cre-r.1
for
CHLRE_11g479500v5


Ortholog ID: 9763
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol RPL4 LOC103843956 LOC106400920 LOC106391122 LOC125594915 LOC107932518 LOC107931938 LOC102612217 LOC100803701 LOC100790380 LOC104879610 LOC7492297 LOC25500064 LOC101254712 LOC102596426 LOC107817573 LOC107828567 LOC4332348 LOC100283234 LOC123097964 LOC123092659 LOC123085380 LOC123449072 LOC8078804 LOC100845528 CHLRE_11g479500v5
Function* ribosomal protein L4 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic large ribosomal subunit protein uL4c 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic large ribosomal subunit protein uL4c 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic large ribosomal subunit protein uL4c-like large ribosomal subunit protein uL4c 50S ribosomal protein L4-like 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic 50S ribosomal protein L4, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
bna00860 Porphyrin metabolism 4
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna00860 Porphyrin metabolism 4
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna00860 Porphyrin metabolism 4
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 16
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi01240 Biosynthesis of cofactors 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837243 103843956 106400920 106391122 125594915 107932518 107931938 102612217 100803701 100790380 104879610 7492297 25500064 101254712 102596426 107817573 107828567 4332348 100283234 123097964 123092659 123085380 123449072 8078804 100845528 5722911
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