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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7496231   exosome complex exonuclease RRP46 homolog 
 ppo-r.4   7496231   exosome complex exonuclease RRP46 homolog 
 ppo-u.5   7462927   exosome complex exonuclease RRP46 homolog 
 gma-u.5   100815140   exosome complex exonuclease RRP46 homolog 
 gma-u.5   100801484   exosome complex exonuclease RRP46 homolog 
 mtr-u.5   11436468   exosome complex exonuclease RRP46 homolog 
 ath-u.5   AT3G46210   Ribosomal protein S5 domain 2-like superfamily protein 
 vvi-u.5   100262803   exosome complex exonuclease RRP46 homolog 
 sly-u.5   101256312   exosome complex exonuclease RRP46 homolog 
 osa-u.5   4334824   exosome complex exonuclease RRP46 homolog 
 zma-u.5   100280057   exosome complex exonuclease RRP46 

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Top 50 coexpressed genes to 7496231 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7496231 (ppo-u.5 coexpression data)

CoexMap"7496231"


ppoLOC7496231 | Entrez gene ID : 7496231    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03018 [list] [network] RNA degradation (133 genes)
GO BP
GO:0016075 [list] [network] rRNA catabolic process  (7 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (10 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (11 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (13 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (14 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (18 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO MF
Protein XP_024458868.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  mito 3,  chlo 2,  cyto_nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_024458868.2)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_024458868.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7496231

.
ppo-r.4
for
7496231

.
ppo-u.5
for
7462927

.
gma-u.5
for
100815140

.
gma-u.5
for
100801484

.
mtr-u.5
for
11436468

.
ath-u.5
for
AT3G46210

.
vvi-u.5
for
100262803

.
sly-u.5
for
101256312

.
osa-u.5
for
4334824

.
zma-u.5
for
100280057

.


Ortholog ID: 8382
Species ath gma sly osa zma vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G46210 LOC100815140 LOC101256312 LOC4334824 LOC100280057 LOC100262803 LOC7462927 LOC7496231 LOC11436468 LOC123087508 LOC123114419 LOC123395192 LOC107937951 LOC107893411 LOC106347531 LOC106407409 CHLRE_14g624500v5 LOC8061392 LOC102597142 LOC102609391 LOC100846048 LOC107793734 LOC107802221
Function* Ribosomal protein S5 domain 2-like superfamily protein exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog uncharacterized protein exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog exosome complex exonuclease RRP46 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma03030 DNA replication 4
gma03410 Base excision repair 3
gma04120 Ubiquitin mediated proteolysis 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03040 Spliceosome 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
tae03010 Ribosome 4
tae03013 Nucleocytoplasmic transport 2
tae04120 Ubiquitin mediated proteolysis 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 4
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 4
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823766 100815140 101256312 4334824 100280057 100262803 7462927 7496231 11436468 123087508 123114419 123395192 107937951 107893411 106347531 106407409 5718307 8061392 102597142 102609391 100846048 107793734 107802221
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