ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-r.7	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-m.9	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-e.2	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-m.4.bio	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-m.4.hor	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-m.4.lig	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-m.4.str	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
ath-m.4.tis	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein
bna-r.1	106347531	exosome complex exonuclease RRP46 homolog
bna-r.1	106407409	exosome complex exonuclease RRP46 homolog
ghi-r.1	107893411	exosome complex exonuclease RRP46 homolog
ghi-r.1	107937951	exosome complex exonuclease RRP46 homolog
cit-r.1	102609391	exosome complex exonuclease RRP46 homolog
gma-u.5	100815140	exosome complex exonuclease RRP46 homolog
gma-u.5	100801484	exosome complex exonuclease RRP46 homolog
vvi-u.5	100262803	exosome complex exonuclease RRP46 homolog
ppo-u.5	7462927	exosome complex exonuclease RRP46 homolog
ppo-u.5	7496231	exosome complex exonuclease RRP46 homolog
mtr-u.5	11436468	exosome complex exonuclease RRP46 homolog
sly-u.5	101256312	exosome complex exonuclease RRP46 homolog
sot-r.1	102597142	exosome complex exonuclease RRP46 homolog
nta-r.1	107802221	exosome complex exonuclease RRP46 homolog
nta-r.1	107793734	exosome complex exonuclease RRP46 homolog
osa-u.5	4334824	exosome complex exonuclease RRP46 homolog
zma-u.5	100280057	exosome complex exonuclease RRP46
tae-r.2	123123951	exosome complex exonuclease RRP46 homolog
tae-r.2	123114419	exosome complex exonuclease RRP46 homolog
tae-r.2	123087508	exosome complex exonuclease RRP46 homolog
hvu-r.1	123395192	exosome complex exonuclease RRP46 homolog
sbi-r.1	8061392	exosome complex exonuclease RRP46 homolog
bdi-r.1	100846048	exosome complex exonuclease RRP46 homolog
cre-r.1	CHLRE_14g624500v5	uncharacterized protein

Annotation

functional annotation

KEGG

ath03018 [list] [network] RNA degradation (114 genes)

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

Protein

NP_001030817.1 [sequence] [blastp]
NP_001030818.1 [sequence] [blastp]
NP_001030819.1 [sequence] [blastp]
NP_001078250.1 [sequence] [blastp]
NP_001190019.1 [sequence] [blastp]
NP_001325681.1 [sequence] [blastp]
NP_190207.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001030817.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001030818.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001030819.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001078250.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001190019.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001325681.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_190207.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001030817.1)
other 7	(predict for NP_001030818.1)
other 7	(predict for NP_001030819.1)
other 7	(predict for NP_001078250.1)
other 7	(predict for NP_001190019.1)
other 7	(predict for NP_001325681.1)
other 7	(predict for NP_190207.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G46210	ath-r.7 for AT3G46210	ath-m.9 for AT3G46210	ath-e.2 for AT3G46210	ath-m.4.bio for AT3G46210	ath-m.4.hor for AT3G46210	ath-m.4.lig for AT3G46210	ath-m.4.str for AT3G46210	ath-m.4.tis for AT3G46210	bna-r.1 for 106347531	bna-r.1 for 106407409	ghi-r.1 for 107893411	ghi-r.1 for 107937951	cit-r.1 for 102609391	gma-u.5 for 100815140	gma-u.5 for 100801484	vvi-u.5 for 100262803	ppo-u.5 for 7462927	ppo-u.5 for 7496231	mtr-u.5 for 11436468	sly-u.5 for 101256312	sot-r.1 for 102597142	nta-r.1 for 107802221	nta-r.1 for 107793734	osa-u.5 for 4334824	zma-u.5 for 100280057	tae-r.2 for 123123951	tae-r.2 for 123114419	tae-r.2 for 123087508	hvu-r.1 for 123395192	sbi-r.1 for 8061392	bdi-r.1 for 100846048	cre-r.1 for CHLRE_14g624500v5

Ortholog

Ortholog ID: 8382

Species

ath

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Ribosomal protein S5 domain 2-like superfamily protein

exosome complex exonuclease RRP46 homolog

exosome complex exonuclease RRP46

exosome complex exonuclease RRP46 homolog

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	7
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	7
bna03008	Ribosome biogenesis in eukaryotes	5
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5
ghi03018	RNA degradation	4
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5
ghi03018	RNA degradation	4
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12
gma03030	DNA replication	4
gma03410	Base excision repair	3
gma04120	Ubiquitin mediated proteolysis	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma03018	RNA degradation	2
gma03030	DNA replication	2
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3
ppo03040	Spliceosome	2
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	2
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	2
nta03018	RNA degradation	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	7
tae03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03010	Ribosome	4
tae03013	Nucleocytoplasmic transport	2
tae04120	Ubiquitin mediated proteolysis	2
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

823766

106347531

106407409

107893411

107937951

102609391

100815140

100801484

100262803

7462927

7496231

11436468

101256312

102597142

107802221

107793734

4334824

100280057

123123951

123114419

123087508

123395192

8061392

100846048

5718307

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G46210 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G46210 (ath-u.5 coexpression data)


Species	ath	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bra
Paralog	9	2	2	1	2	1	2	1	1	1	2	1	1	3	1	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G46210 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G46210 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**