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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7496505   pumilio homolog 24 
 ppo-r.4   7496505   pumilio homolog 24 
 ppo-m.4   7496505   pumilio homolog 24 
 ppo-u.5   18101891   pumilio homolog 24 
 gma-u.5   100815996   pumilio homolog 24 
 gma-u.5   100780739   pumilio homolog 24 
 mtr-u.5   25494096   pumilio homolog 24 
 ath-u.5   PUM24   pumilio 24 
 vvi-u.5   100255113   pumilio homolog 24 
 sly-u.5   101266558   pumilio homolog 24 
 osa-u.5   4334667   pumilio homolog 24 
 zma-u.5   100191998   uncharacterized LOC100191998 

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Top 50 coexpressed genes to 7496505 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7496505 (ppo-u.5 coexpression data)

CoexMap"7496505"


ppoLOC7496505 | Entrez gene ID : 7496505    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 4 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006417 [list] [network] regulation of translation  (60 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
Protein XP_002314353.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 1,  cysk 1,  chlo_mito 1,  golg_plas 1  (predict for XP_002314353.2)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for XP_002314353.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7496505

.
ppo-r.4
for
7496505

.
ppo-m.4
for
7496505

.
ppo-u.5
for
18101891

.
gma-u.5
for
100815996

.
gma-u.5
for
100780739

.
mtr-u.5
for
25494096

.
ath-u.5
for
PUM24

.
vvi-u.5
for
100255113

.
sly-u.5
for
101266558

.
osa-u.5
for
4334667

.
zma-u.5
for
100191998

.


Ortholog ID: 5740
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PUM24 LOC100815996 LOC100780739 LOC101266558 LOC4334667 LOC100191998 LOC103869733 LOC100255113 LOC7496505 LOC18101891 LOC25494096 LOC123114108 LOC123114109 LOC123398977 LOC123398978 LOC107888931 LOC107891852 LOC106401633 LOC106452073 CHLRE_12g528950v5 LOC8080200 LOC102600058 LOC102625301 LOC100846788 LOC107780977 LOC107812851
Function* pumilio 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 uncharacterized LOC100191998 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24-like pumilio homolog 24-like pumilio homolog 24 pumilio homolog 24 pumilio homolog 24-like pumilio homolog 24 uncharacterized protein pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24 pumilio homolog 24
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 9
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00760 Nicotinate and nicotinamide metabolism 3
tae03013 Nucleocytoplasmic transport 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820934 100815996 100780739 101266558 4334667 100191998 103869733 100255113 7496505 18101891 25494096 123114108 123114109 123398977 123398978 107888931 107891852 106401633 106452073 5722434 8080200 102600058 102625301 100846788 107780977 107812851
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