ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8064632	uncharacterized LOC8064632
zma-u.5	100276818	uncharacterized LOC100276818
osa-u.5	4340256	DNA-directed RNA polymerase I subunit rpa43
osa-u.5	4352407	DNA-directed RNA polymerase I subunit rpa43
tae-r.2	123111630	uncharacterized LOC123111630
tae-r.2	123121053	uncharacterized LOC123121053
tae-r.2	123103431	uncharacterized LOC123103431
hvu-r.1	123397765	uncharacterized LOC123397765
bdi-r.1	100831354	DNA-directed RNA polymerase I subunit rpa43
ath-u.5	AT1G75670	DNA-directed RNA polymerase
gma-u.5	100816727	uncharacterized LOC100816727
gma-u.5	100527229	uncharacterized LOC100527229
sly-u.5	101248579	uncharacterized LOC101248579
bra-r.6	103852969	uncharacterized LOC103852969
vvi-u.5	100264366	uncharacterized LOC100264366
ppo-u.5	7493952	uncharacterized LOC7493952
ppo-u.5	7490660	DNA-directed RNA polymerase I subunit rpa43
mtr-u.5	11436168	DNA-directed RNA polymerase I subunit rpa43
ghi-r.1	107955495	uncharacterized LOC107955495
ghi-r.1	107955492	uncharacterized LOC107955492
ghi-r.1	107951050	uncharacterized LOC107951050
bna-r.1	BNAA02G17360D	uncharacterized BNAA02G17360D
bna-r.1	106390980	uncharacterized LOC106390980
sot-r.1	102591771	uncharacterized LOC102591771
cit-r.1	102620892	uncharacterized LOC102620892
nta-r.1	107801865	uncharacterized LOC107801865
nta-r.1	107798310	uncharacterized LOC107798310
cre-r.1	CHLRE_02g086750v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006352 [list] [network] DNA-templated transcription initiation

(67 genes)

IEA

GO CC

GO:0005736 [list] [network] RNA polymerase I complex

(19 genes)

IEA

GO MF

Protein

XP_002443282.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, chlo 1, plas 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1

(predict for XP_002443282.1)

Subcellular
localization
TargetP

other 4

(predict for XP_002443282.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8064632	zma-u.5 for 100276818	osa-u.5 for 4340256	osa-u.5 for 4352407	tae-r.2 for 123111630	tae-r.2 for 123121053	tae-r.2 for 123103431	hvu-r.1 for 123397765	bdi-r.1 for 100831354	ath-u.5 for AT1G75670	gma-u.5 for 100816727	gma-u.5 for 100527229	sly-u.5 for 101248579	bra-r.6 for 103852969	vvi-u.5 for 100264366	ppo-u.5 for 7493952	ppo-u.5 for 7490660	mtr-u.5 for 11436168	ghi-r.1 for 107955495	ghi-r.1 for 107955492	ghi-r.1 for 107951050	bna-r.1 for BNAA02G17360D	bna-r.1 for 106390980	sot-r.1 for 102591771	cit-r.1 for 102620892	nta-r.1 for 107801865	nta-r.1 for 107798310	cre-r.1 for CHLRE_02g086750v5

Ortholog

Ortholog ID: 7857

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC8064632

uncharacterized LOC100276818

DNA-directed RNA polymerase I subunit rpa43

uncharacterized LOC123111630

uncharacterized LOC123121053

uncharacterized LOC123103431

uncharacterized LOC123397765

DNA-directed RNA polymerase I subunit rpa43

DNA-directed RNA polymerase

uncharacterized LOC100816727

uncharacterized LOC100527229

uncharacterized LOC101248579

uncharacterized LOC103852969

uncharacterized LOC100264366

uncharacterized LOC7493952

DNA-directed RNA polymerase I subunit rpa43

uncharacterized LOC107955495

uncharacterized LOC107955492

uncharacterized LOC107910711

uncharacterized BNAA02G17360D

uncharacterized LOC106390980

uncharacterized LOC102591771

uncharacterized LOC102620892

uncharacterized LOC107801865

uncharacterized LOC107798310

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4
hvu03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	4
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	3
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8
vvi00230	Purine metabolism	3
vvi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03020	RNA polymerase	2
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

8064632

100276818

4340256

4352407

123111630

123121053

123103431

123397765

100831354

843901

100816727

100527229

101248579

103852969

100264366

7493952

7490660

11436168

107955495

107955492

107910711

106422393

106390980

102591771

102620892

107801865

107798310

5727406

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8064632 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8064632 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	2	3	1	1	1	2	1	1	1	2	1	3	2	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8064632 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8064632 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**