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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8065406   60S ribosomal protein L39 
 zma-u.5   118473275   60S ribosomal protein L39-like 
 zma-u.5   103654171   60S ribosomal protein L39-like 
 zma-u.5   100280595   60S ribosomal protein L39-like 
 osa-u.5   4331011   60S ribosomal protein L39 
 osa-u.5   4331014   60S ribosomal protein L39 
 osa-u.5   9268459   60S ribosomal protein L39-3-like 
 ath-u.5   AT2G25210   Ribosomal protein L39 family protein 
 ath-u.5   AT3G02190   Ribosomal protein L39 family protein 
 ath-u.5   AT4G31985   Ribosomal protein L39 family protein 
 gma-u.5   100306305   60S ribosomal protein L39 
 gma-u.5   100807176   60S ribosomal protein L39 
 gma-u.5   100801450   60S ribosomal protein L39 
 sly-u.5   101256892   large ribosomal subunit protein eL39x 
 sly-u.5   101247403   large ribosomal subunit protein eL39x 
 ppo-u.5   18100582   60S ribosomal protein L39 
 ppo-u.5   112327915   60S ribosomal protein L39 
 mtr-u.5   11435427   60S ribosomal protein L39-3 
 mtr-u.5   25481949   60S ribosomal protein L39-3 

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Top 50 coexpressed genes to 8065406 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8065406 (sbi-r.1 coexpression data)

CoexMap"8065406"


sbiLOC8065406 | Entrez gene ID : 8065406    
Species sbi zma osa ath gma sly ppo mtr bra nta cre vvi cit hvu bdi sot tae bna ghi
Paralog 1 3 3 3 3 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03010 [list] [network] Ribosome (360 genes)
GO BP
GO:0006412 [list] [network] translation  (459 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (113 genes)  IEA  
GO:0005840 [list] [network] ribosome  (326 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (320 genes)  IEA  
Protein XP_002437959.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  plas 1,  extr 1  (predict for XP_002437959.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_002437959.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8065406

.
zma-u.5
for
118473275

.
zma-u.5
for
103654171

.
zma-u.5
for
100280595

.
osa-u.5
for
4331011

.
osa-u.5
for
4331014

.
osa-u.5
for
9268459

.
ath-u.5
for
AT2G25210

.
ath-u.5
for
AT3G02190

.
ath-u.5
for
AT4G31985

.
gma-u.5
for
100306305

.
gma-u.5
for
100807176

.
gma-u.5
for
100801450

.
sly-u.5
for
101256892

.
sly-u.5
for
101247403

.
ppo-u.5
for
18100582

.
ppo-u.5
for
112327915

.
mtr-u.5
for
11435427

.
mtr-u.5
for
25481949

.


Ortholog ID: 1911
Species ath ath gma gma sly sly osa osa zma zma bra bra ppo ppo mtr mtr tae tae ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi
Symbol AT3G02190 AT4G31985 LOC100807176 LOC100779071 LOC101247403 LOC101256892 LOC4331011 LOC4331014 LOC100280595 LOC103654171 LOC103864616 LOC103862101 LOC7493414 LOC18100582 LOC11435427 LOC25481949 LOC123150917 LOC123139148 LOC107890469 LOC107900491 LOC106449937 LOC106449944 LOC8065406 LOC8084645 LOC102600770 LOC102586829 LOC127901240 LOC102617787 LOC100827493 LOC100840840
Function* Ribosomal protein L39 family protein Ribosomal protein L39 family protein 60S ribosomal protein L39 60S ribosomal protein L39 large ribosomal subunit protein eL39x large ribosomal subunit protein eL39x 60S ribosomal protein L39 60S ribosomal protein L39 60S ribosomal protein L39-like 60S ribosomal protein L39-like 60S ribosomal protein L39-1 60S ribosomal protein L39-1 60S ribosomal protein L39 60S ribosomal protein L39 60S ribosomal protein L39-3 60S ribosomal protein L39-3 60S ribosomal protein L39 60S ribosomal protein L39 60S ribosomal protein L39-3 60S ribosomal protein L39-3 60S ribosomal protein L39-1 60S ribosomal protein L39-1 60S ribosomal protein L39 60S ribosomal protein L39 60S ribosomal protein L39-3-like 60S ribosomal protein L39-3-like 60S ribosomal protein L39-3 60S ribosomal protein L39-3 60S ribosomal protein L39 60S ribosomal protein L39
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03018 RNA degradation 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma03050 Proteasome 2
gma03440 Homologous recombination 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
tae00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
bna00220 Arginine biosynthesis 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00270 Cysteine and methionine metabolism 2
bna00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 16
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820350 829329 100807176 100779071 101247403 101256892 4331011 4331014 100280595 103654171 103864616 103862101 7493414 18100582 11435427 25481949 123150917 123139148 107890469 107900491 106449937 106449944 8065406 8084645 102600770 102586829 127901240 102617787 100827493 100840840
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