ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8076023	uncharacterized LOC8076023
zma-u.5	103628806	uncharacterized LOC103628806
zma-u.5	100278395	uncharacterized LOC100278395
osa-u.5	4330343	uncharacterized LOC4330343
tae-r.2	123145114	uncharacterized LOC123145114
tae-r.2	123137799	uncharacterized LOC123137799
tae-r.2	123128019	uncharacterized LOC123128019
hvu-r.1	123415204	uncharacterized LOC123415204
bdi-r.1	100824084	uncharacterized LOC100824084
ath-u.5	AT1G73240	nucleoporin protein Ndc1-Nup protein
gma-u.5	100800150	uncharacterized LOC100800150
gma-u.5	100796588	uncharacterized LOC100796588
sly-u.5	101265714	uncharacterized LOC101265714
bra-r.6	103831805	uncharacterized LOC103831805
vvi-u.5	100256014	uncharacterized LOC100256014
ppo-u.5	7455768	uncharacterized LOC7455768
mtr-u.5	11428584	uncharacterized LOC11428584
mtr-u.5	11438321	uncharacterized LOC11438321
mtr-u.5	25500152	uncharacterized LOC25500152
ghi-r.1	121204913	uncharacterized LOC121204913
ghi-r.1	107916968	uncharacterized LOC107916968
bna-r.1	106354259	uncharacterized LOC106354259
bna-r.1	111207075	uncharacterized LOC111207075
cit-r.1	102627885	uncharacterized LOC102627885
nta-r.1	107760475	uncharacterized LOC107760475
nta-r.1	107830617	uncharacterized LOC107830617
cre-r.1	CHLRE_03g197550v5	uncharacterized protein

Annotation

functional annotation

KEGG

sbi03013 [list] [network] Nucleocytoplasmic transport (112 genes)

GO BP

GO:0006999 [list] [network] nuclear pore organization

(4 genes)

IEA

GO CC

GO:0070762 [list] [network] nuclear pore transmembrane ring

(1 genes)

IEA

GO MF

GO:0030674 [list] [network] protein-macromolecule adaptor activity

(180 genes)

IEA

Protein

XP_002454467.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, E.R. 2, E.R._plas 2, plas 1

(predict for XP_002454467.1)

Subcellular
localization
TargetP

mito 7

(predict for XP_002454467.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8076023	zma-u.5 for 103628806	zma-u.5 for 100278395	osa-u.5 for 4330343	tae-r.2 for 123145114	tae-r.2 for 123137799	tae-r.2 for 123128019	hvu-r.1 for 123415204	bdi-r.1 for 100824084	ath-u.5 for AT1G73240	gma-u.5 for 100800150	gma-u.5 for 100796588	sly-u.5 for 101265714	bra-r.6 for 103831805	vvi-u.5 for 100256014	ppo-u.5 for 7455768	mtr-u.5 for 11428584	mtr-u.5 for 11438321	mtr-u.5 for 25500152	ghi-r.1 for 121204913	ghi-r.1 for 107916968	bna-r.1 for 106354259	bna-r.1 for 111207075	cit-r.1 for 102627885	nta-r.1 for 107760475	nta-r.1 for 107830617	cre-r.1 for CHLRE_03g197550v5

Ortholog

Ortholog ID: 8310

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

cit

nta

cre

Symbol

Function^*

uncharacterized LOC8076023

uncharacterized LOC103628806

uncharacterized LOC100278395

uncharacterized LOC4330343

uncharacterized LOC123145114

uncharacterized LOC123137799

uncharacterized LOC123128019

uncharacterized LOC123415204

uncharacterized LOC100824084

nucleoporin protein Ndc1-Nup protein

uncharacterized LOC100800150

uncharacterized LOC100796588

uncharacterized LOC101265714

uncharacterized LOC103831805

uncharacterized LOC100256014

uncharacterized LOC7455768

uncharacterized LOC11428584

uncharacterized LOC11438321

uncharacterized LOC25500139

uncharacterized LOC121204913

uncharacterized LOC107916968

uncharacterized LOC106354259

uncharacterized LOC111207075

uncharacterized LOC102627885

uncharacterized LOC107760475

uncharacterized LOC107830617

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03082	ATP-dependent chromatin remodeling	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03460	Fanconi anemia pathway	3
zma03440	Homologous recombination	3
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi03040	Spliceosome	2
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	4
gma00513	Various types of N-glycan biosynthesis	4
gma04141	Protein processing in endoplasmic reticulum	4
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	4
gma00513	Various types of N-glycan biosynthesis	4
gma04141	Protein processing in endoplasmic reticulum	4
gma03013	Nucleocytoplasmic transport	2
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	6
sly00260	Glycine, serine and threonine metabolism	2
sly00750	Vitamin B6 metabolism	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03013	Nucleocytoplasmic transport	4
bra03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	6
ppo01230	Biosynthesis of amino acids	6
ppo00010	Glycolysis / Gluconeogenesis	5
ppo00710	Carbon fixation by Calvin cycle	4
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	4
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	5
mtr03018	RNA degradation	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	4
ghi00510	N-Glycan biosynthesis	4
ghi00514	Other types of O-glycan biosynthesis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00514	Other types of O-glycan biosynthesis	2
ghi03013	Nucleocytoplasmic transport	2
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	13
bna03008	Ribosome biogenesis in eukaryotes	4
bna03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	13
bna03008	Ribosome biogenesis in eukaryotes	4
bna03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03013	Nucleocytoplasmic transport	3
cit00510	N-Glycan biosynthesis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03082	ATP-dependent chromatin remodeling	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03082	ATP-dependent chromatin remodeling	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	2
cre03082	ATP-dependent chromatin remodeling	2
cre03083	Polycomb repressive complex	2
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

8076023

103628806

100278395

4330343

123145114

123137799

123128019

123415204

100824084

843658

100800150

100796588

101265714

103831805

100256014

7455768

11428584

11438321

25500139

121204913

107916968

106354259

111207075

102627885

107760475

107830617

5718784

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8076023 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8076023 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	cit	nta	cre	sot
Paralog	1	2	1	3	1	1	1	2	1	1	1	1	3	2	2	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8076023 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8076023 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**