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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8078086   KH domain-containing protein HEN4 
 zma-u.5   100285619   nucleic acid binding protein 
 osa-u.5   4327782   RNA-binding KH domain-containing protein RCF3 
 gma-u.5   100785136   KH domain-containing protein HEN4 
 gma-u.5   100777433   KH domain-containing protein HEN4 
 sly-u.5   101245756   RNA-binding KH domain-containing protein RCF3 
 vvi-u.5   100267715   KH domain-containing protein HEN4 
 ppo-u.5   7467235   KH domain-containing protein HEN4 
 mtr-u.5   11436115   KH domain-containing protein HEN4 

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Top 50 coexpressed genes to 8078086 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8078086 (sbi-r.1 coexpression data)

CoexMap"8078086"


sbiLOC8078086 | Entrez gene ID : 8078086      
Species sbi zma osa gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae ath bna ghi
Paralog 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010468 [list] [network] regulation of gene expression  (1892 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
Protein XP_002457055.1 [sequence] [blastp]
XP_021311759.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for XP_002457055.1)
mito 6,  chlo 4  (predict for XP_021311759.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_002457055.1)
chlo 4  (predict for XP_021311759.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8078086

.
zma-u.5
for
100285619

.
osa-u.5
for
4327782

.
gma-u.5
for
100785136

.
gma-u.5
for
100777433

.
sly-u.5
for
101245756

.
vvi-u.5
for
100267715

.
ppo-u.5
for
7467235

.
mtr-u.5
for
11436115

.


Ortholog ID: 12070
Species gma gma sly osa zma vvi ppo mtr tae tae hvu ghi ghi cre sbi sot cit bdi nta nta
Symbol LOC100777433 LOC100785136 LOC101245756 LOC4327782 LOC100285619 LOC100267715 LOC7467235 LOC11436115 LOC123077906 LOC123060833 LOC123443288 LOC107930579 LOC107907289 CHLRE_17g707400v5 LOC8078086 LOC102597985 LOC102619376 LOC100821190 LOC107791404 LOC107774425
Function* KH domain-containing protein HEN4 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 nucleic acid binding protein KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein HEN4-like KH domain-containing protein HEN4 KH domain-containing protein HEN4 uncharacterized protein KH domain-containing protein HEN4 KH domain-containing protein At4g18375-like RNA-binding KH domain-containing protein RCF3-like KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3-like RNA-binding KH domain-containing protein RCF3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
gma01230 Biosynthesis of amino acids 4
gma00260 Glycine, serine and threonine metabolism 2
gma00261 Monobactam biosynthesis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 8
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 8
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 4
cit03018 RNA degradation 3
cit03013 Nucleocytoplasmic transport 3
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 4
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03050 Proteasome 3
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100777433 100785136 101245756 4327782 100285619 100267715 7467235 11436115 123077906 123060833 123443288 107930579 107907289 66056933 8078086 102597985 102619376 100821190 107791404 107774425
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