ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8079828	E3 ubiquitin-protein ligase At3g02290
sbi-r.1	110435333	E3 ubiquitin-protein ligase At3g02290-like
sbi-r.1	8064525	E3 ubiquitin-protein ligase At3g02290
zma-u.5	103655759	E3 ubiquitin-protein ligase ATL4
zma-u.5	100282797	uncharacterized LOC100282797
zma-u.5	100282360	protein binding protein
osa-u.5	4350962	E3 ubiquitin-protein ligase At3g02290
osa-u.5	4333386	E3 ubiquitin-protein ligase At3g02290
osa-u.5	4327238	E3 ubiquitin-protein ligase At3g02290
tae-r.2	123086083	E3 ubiquitin-protein ligase At3g02290
tae-r.2	123072082	E3 ubiquitin-protein ligase At3g02290
hvu-r.1	123445299	E3 ubiquitin-protein ligase At3g02290-like
hvu-r.1	123444690	E3 ubiquitin-protein ligase At3g02290-like
hvu-r.1	123448357	E3 ubiquitin-protein ligase At3g02290-like
bdi-r.1	100825451	E3 ubiquitin-protein ligase At3g02290
bdi-r.1	100832121	E3 ubiquitin-protein ligase At3g02290
bdi-r.1	100839977	E3 ubiquitin-protein ligase At3g02290
ath-u.5	AT3G02290	RING/U-box superfamily protein
ath-u.5	AT5G15790	RING/U-box superfamily protein
ath-u.5	AT5G38895	RING/U-box superfamily protein
gma-u.5	100788192	E3 ubiquitin-protein ligase At3g02290
gma-u.5	100790104	RING finger/U-box-containing protein
sly-u.5	101252743	E3 ubiquitin-protein ligase At3g02290-like
sly-u.5	101250758	E3 ubiquitin-protein ligase At3g02290
sly-u.5	101262010	E3 ubiquitin-protein ligase At3g02290
bra-r.6	103846386	E3 ubiquitin-protein ligase At3g02290
bra-r.6	103863812	E3 ubiquitin-protein ligase At3g02290
vvi-u.5	100247128	E3 ubiquitin-protein ligase At3g02290
vvi-u.5	100244614	E3 ubiquitin-protein ligase At3g02290
ppo-u.5	18097684	E3 ubiquitin-protein ligase At3g02290
ppo-u.5	7497577	E3 ubiquitin-protein ligase At3g02290
ppo-u.5	18107348	E3 ubiquitin-protein ligase At3g02290
mtr-u.5	11421579	E3 ubiquitin-protein ligase At3g02290
mtr-u.5	25495435	E3 ubiquitin-protein ligase At3g02290
ghi-r.1	107898982	E3 ubiquitin-protein ligase At3g02290
ghi-r.1	107946384	E3 ubiquitin-protein ligase At3g02290
bna-r.1	125594175	E3 ubiquitin-protein ligase At3g02290-like
bna-r.1	106424776	E3 ubiquitin-protein ligase At3g02290
bna-r.1	106407192	E3 ubiquitin-protein ligase At3g02290
sot-r.1	102600289	E3 ubiquitin-protein ligase At3g02290-like
sot-r.1	102598476	E3 ubiquitin-protein ligase At3g02290-like
sot-r.1	102587162	E3 ubiquitin-protein ligase At3g02290-like
cit-r.1	102621029	E3 ubiquitin-protein ligase At3g02290
cit-r.1	102616991	E3 ubiquitin-protein ligase At3g02290
cit-r.1	102624444	E3 ubiquitin-protein ligase At3g02290
nta-r.1	107824143	E3 ubiquitin-protein ligase At3g02290
nta-r.1	107770056	E3 ubiquitin-protein ligase At3g02290
nta-r.1	107816024	E3 ubiquitin-protein ligase At3g02290
cre-r.1	CHLRE_08g371400v5	uncharacterized protein

Top 50 coexpressed genes to 8079828 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8079828 (sbi-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

E3 ubiquitin-protein ligase At3g02290

KEGG

GO BP

GO CC

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity

(328 genes)

IEA

Protein

XP_002456881.1 [sequence] [blastp]
XP_021313259.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, extr 2	(predict for XP_002456881.1)
nucl 7, extr 2	(predict for XP_021313259.1)

Subcellular
localization
TargetP

other 7	(predict for XP_002456881.1)
other 7	(predict for XP_021313259.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8079828	sbi-r.1 for 110435333	sbi-r.1 for 8064525	zma-u.5 for 103655759	zma-u.5 for 100282797	zma-u.5 for 100282360	osa-u.5 for 4350962	osa-u.5 for 4333386	osa-u.5 for 4327238	tae-r.2 for 123086083	tae-r.2 for 123072082	hvu-r.1 for 123445299	hvu-r.1 for 123444690	hvu-r.1 for 123448357	bdi-r.1 for 100825451	bdi-r.1 for 100832121	bdi-r.1 for 100839977	ath-u.5 for AT3G02290	ath-u.5 for AT5G15790	ath-u.5 for AT5G38895	gma-u.5 for 100788192	gma-u.5 for 100790104	sly-u.5 for 101252743	sly-u.5 for 101250758	sly-u.5 for 101262010	bra-r.6 for 103846386	bra-r.6 for 103863812	vvi-u.5 for 100247128	vvi-u.5 for 100244614	ppo-u.5 for 18097684	ppo-u.5 for 7497577	ppo-u.5 for 18107348	mtr-u.5 for 11421579	mtr-u.5 for 25495435	ghi-r.1 for 107898982	ghi-r.1 for 107946384	bna-r.1 for 125594175	bna-r.1 for 106424776	bna-r.1 for 106407192	sot-r.1 for 102600289	sot-r.1 for 102598476	sot-r.1 for 102587162	cit-r.1 for 102621029	cit-r.1 for 102616991	cit-r.1 for 102624444	nta-r.1 for 107824143	nta-r.1 for 107770056	nta-r.1 for 107816024	cre-r.1 for CHLRE_08g371400v5

Please wait a moment.

Ortholog

Ortholog ID: 1055

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

E3 ubiquitin-protein ligase At3g02290

E3 ubiquitin-protein ligase At3g02290-like

E3 ubiquitin-protein ligase At3g02290

E3 ubiquitin-protein ligase ATL4

uncharacterized LOC100282797

uncharacterized LOC100273572

E3 ubiquitin-protein ligase At3g02290

E3 ubiquitin-protein ligase At3g02290-like

E3 ubiquitin-protein ligase At3g02290

RING/U-box superfamily protein

RING finger/U-box-containing protein

RING-H2 finger protein

E3 ubiquitin-protein ligase At3g02290-like

E3 ubiquitin-protein ligase At3g02290

E3 ubiquitin-protein ligase At3g02290-like

E3 ubiquitin-protein ligase At3g02290

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00260	Glycine, serine and threonine metabolism	4
sbi01200	Carbon metabolism	4
sbi01230	Biosynthesis of amino acids	4
sbi01240	Biosynthesis of cofactors	3
sbi00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	4
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma00310	Lysine degradation	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
zma04136	Autophagy - other	2
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	3
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2
osa01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5
bdi04141	Protein processing in endoplasmic reticulum	5
bdi04144	Endocytosis	4
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	4
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3
sly00600	Sphingolipid metabolism	2
sly04142	Lysosome	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra00920	Sulfur metabolism	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	8
ghi00190	Oxidative phosphorylation	4
ghi00310	Lysine degradation	3
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
bna01240	Biosynthesis of cofactors	3
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00310	Lysine degradation	3
cit00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta03083	Polycomb repressive complex	2

Expression

Expression pattern

Entrez Gene ID^*

8079828

110435333

8064525

103655759

100282797

100273572

4350962

4333386

4327238

123086083

123172610

123445299

123448357

100825451

100832121

100839977

821179

833881

100790104

100790543

100777068

101252743

101250758

101262010

103863812

100247128

100244614

18097684

7497577

11421579

25495435

107954765

107953963

106407192

106382857

106379049

102600289

102598476

102587162

102621029

102616991

102624444

107824143

107810564

107804994

5726852

The preparation time of this page was 0.3 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	3	2	3	3	3	2	3	2	2	3	2	2	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8079828 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8079828 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**