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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   emb2444   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100792707   splicing factor 3B subunit 4 
 gma-u.5   100791039   splicing factor 3B subunit 4 
 vvi-u.5   100251324   uncharacterized LOC100251324 
 ppo-u.5   7473156   uncharacterized LOC7473156 
 mtr-u.5   11419010   splicing factor 3B subunit 4 
 sly-u.5   101244943   uncharacterized LOC101244943 
 osa-u.5   4348798   uncharacterized LOC4348798 
 zma-u.5   100501457   RNA-binding (RRM/RBD/RNP motifs) family protein 
 zma-u.5   100192006   uncharacterized LOC100192006 

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Top 50 coexpressed genes to emb2444 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to emb2444 (ath-u.5 coexpression data)

CoexMap"816366"


athemb2444 | Entrez gene ID : 816366      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (55 genes)  IMP  
GO:0010075 [list] [network] regulation of meristem growth  (75 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP NAS  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0070063 [list] [network] RNA polymerase binding  (7 genes)  IPI  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_179441.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  extr 1,  E.R. 1  (predict for NP_179441.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_179441.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
emb2444
ath-r.7
for
emb2444
ath-m.9
for
emb2444
ath-e.2
for
emb2444
ath-m.4.bio
for
emb2444
ath-m.4.hor
for
emb2444
ath-m.4.lig
for
emb2444
ath-m.4.str
for
emb2444
ath-m.4.tis
for
emb2444
gma-u.5
for
100792707
gma-u.5
for
100791039
vvi-u.5
for
100251324
ppo-u.5
for
7473156
mtr-u.5
for
11419010
sly-u.5
for
101244943
osa-u.5
for
4348798
zma-u.5
for
100501457
zma-u.5
for
100192006


Ortholog ID: 7919
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot sot nta osa zma zma tae tae hvu sbi bdi cre
Symbol emb2444 LOC103828385 LOC103837863 LOC106435109 LOC106359169 LOC107914295 LOC107900636 LOC102619931 LOC100792707 LOC100791039 LOC100251324 LOC7473156 LOC11419010 LOC101244943 LOC102599002 LOC102590051 LOC107805053 LOC4348798 LOC100192006 LOC100501457 LOC123119632 LOC123044715 LOC123430133 LOC8070527 LOC100822253 CHLRE_06g254800v5
Function* RNA-binding (RRM/RBD/RNP motifs) family protein splicing factor 3B subunit 4 splicing factor 3B subunit 4 splicing factor 3B subunit 4 splicing factor 3B subunit 4-like splicing factor 3B subunit 4 splicing factor 3B subunit 4 uncharacterized LOC102619931 splicing factor 3B subunit 4 splicing factor 3B subunit 4 uncharacterized LOC100251324 uncharacterized LOC7473156 splicing factor 3B subunit 4 uncharacterized LOC101244943 splicing factor 3B subunit 4-like splicing factor 3B subunit 4-like uncharacterized LOC107805053 uncharacterized LOC4348798 uncharacterized LOC100192006 RNA-binding (RRM/RBD/RNP motifs) family protein splicing factor 3B subunit 4 splicing factor 3B subunit 4 splicing factor 3B subunit 4 splicing factor 3B subunit 4 splicing factor 3B subunit 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04141 Protein processing in endoplasmic reticulum 4
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra03010 Ribosome 2
bra03040 Spliceosome 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03010 Ribosome 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03022 Basal transcription factors 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03022 Basal transcription factors 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03018 RNA degradation 2
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03010 Ribosome 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03015 mRNA surveillance pathway 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 12
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
bdi03013 Nucleocytoplasmic transport 4
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
cre03013 Nucleocytoplasmic transport 3
cre03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816366 103828385 103837863 106435109 106359169 107914295 107900636 102619931 100792707 100791039 100251324 7473156 11419010 101244943 102599002 102590051 107805053 4348798 100192006 100501457 123119632 123044715 123430133 8070527 100822253 5722138
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