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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RKP   uncharacterized protein 
 ath-r.7   RKP   uncharacterized protein 
 ath-m.9   RKP   uncharacterized protein 
 ath-e.2   RKP   uncharacterized protein 
 ath-m.4.bio   RKP   uncharacterized protein 
 ath-m.4.hor   RKP   uncharacterized protein 
 ath-m.4.lig   RKP   uncharacterized protein 
 ath-m.4.str   RKP   uncharacterized protein 
 ath-m.4.tis   RKP   uncharacterized protein 
 gma-u.5   100800617   E3 ubiquitin-protein ligase RKP 
 gma-u.5   100792381   E3 ubiquitin-protein ligase RKP 
 vvi-u.5   100250977   E3 ubiquitin-protein ligase RKP 
 ppo-u.5   7457129   E3 ubiquitin-protein ligase RKP 
 ppo-u.5   7486334   E3 ubiquitin-protein ligase RKP 
 mtr-u.5   11443494   E3 ubiquitin-protein ligase RKP 
 sly-u.5   101249347   E3 ubiquitin-protein ligase RKP 
 osa-u.5   4343974   E3 ubiquitin-protein ligase RKP 
 zma-u.5   100280438   uncharacterized LOC100280438 

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Top 50 coexpressed genes to RKP (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RKP (ath-u.5 coexpression data)

CoexMap"816737"


athRKP | Entrez gene ID : 816737      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000060 [list] [network] positive regulation of ubiquitin-dependent protein catabolic process  (4 genes)  IDA  
GO:0009615 [list] [network] response to virus  (102 genes)  IEP  
GO:0051726 [list] [network] regulation of cell cycle  (135 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0051603 [list] [network] proteolysis involved in protein catabolic process  (242 genes)  IMP  
GO:0030163 [list] [network] protein catabolic process  (264 genes)  IMP  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (192 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (83 genes)  IDA  
Protein NP_001189573.1 [sequence] [blastp]
NP_850020.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 1,  vacu 1  (predict for NP_001189573.1)
plas 6,  nucl 1,  vacu 1  (predict for NP_850020.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001189573.1)
other 6  (predict for NP_850020.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RKP
ath-r.7
for
RKP
ath-m.9
for
RKP
ath-e.2
for
RKP
ath-m.4.bio
for
RKP
ath-m.4.hor
for
RKP
ath-m.4.lig
for
RKP
ath-m.4.str
for
RKP
ath-m.4.tis
for
RKP
gma-u.5
for
100800617
gma-u.5
for
100792381
vvi-u.5
for
100250977
ppo-u.5
for
7457129
ppo-u.5
for
7486334
mtr-u.5
for
11443494
sly-u.5
for
101249347
osa-u.5
for
4343974
zma-u.5
for
100280438


Ortholog ID: 11654
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma sbi cre
Symbol RKP LOC103842484 LOC106429081 LOC106415060 LOC107914376 LOC121208246 LOC102631448 LOC100792381 LOC100800617 LOC100250977 LOC7457129 LOC7486334 LOC11443494 LOC101249347 LOC102589041 LOC107804418 LOC142174565 LOC4343974 LOC100280438 LOC8079354 CHLRE_12g519150v5
Function* uncharacterized protein E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP-like E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP E3 ubiquitin-protein ligase RKP-like E3 ubiquitin-protein ligase RKP-like E3 ubiquitin-protein ligase RKP uncharacterized LOC100280438 E3 ubiquitin-protein ligase RKP uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
bra00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 4
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816737 103842484 106429081 106415060 107914376 121208246 102631448 100792381 100800617 100250977 7457129 7486334 11443494 101249347 102589041 107804418 142174565 4343974 100280438 8079354 5722615
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