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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PAE2   20S proteasome alpha subunit E2 
 ath-r.7   PAE2   20S proteasome alpha subunit E2 
 ath-m.9   PAE2   20S proteasome alpha subunit E2 
 ath-e.2   PAE2   20S proteasome alpha subunit E2 
 ath-m.4.bio   PAE2   20S proteasome alpha subunit E2 
 ath-m.4.hor   PAE2   20S proteasome alpha subunit E2 
 ath-m.4.lig   PAE2   20S proteasome alpha subunit E2 
 ath-m.4.str   PAE2   20S proteasome alpha subunit E2 
 ath-m.4.tis   PAE2   20S proteasome alpha subunit E2 
 ath-u.5   PAE1   20S proteasome alpha subunit E1 
 gma-u.5   PAE1   20S proteasome subunit 
 gma-u.5   100799919   proteasome subunit alpha type-5-like 
 gma-u.5   100796147   proteasome subunit alpha type-5 
 vvi-u.5   100263432   proteasome subunit alpha type-5-like 
 ppo-u.5   7470748   proteasome subunit alpha type-5 
 ppo-u.5   18094673   proteasome subunit alpha type-5 
 mtr-u.5   25485590   proteasome subunit alpha type-5 
 sly-u.5   101247093   proteasome subunit alpha type-5 
 sly-u.5   101266742   proteasome subunit alpha type-5 
 osa-u.5   4350922   proteasome subunit alpha type-5-like 
 zma-u.5   100282220   proteasome subunit alpha type 5 
 zma-u.5   100283546   proteasome subunit alpha type 5 

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Top 50 coexpressed genes to PAE2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAE2 (ath-u.5 coexpression data)

CoexMap"820649"


athPAE2 | Entrez gene ID : 820649      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 10 3 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (12 genes)  ISS  
GO:0005839 [list] [network] proteasome core complex  (23 genes)  TAS  
GO:0000502 [list] [network] proteasome complex  (53 genes)  IDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004540 [list] [network] RNA nuclease activity  (125 genes)  IDA  
Protein NP_188046.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  cyto 3,  chlo 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_188046.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for NP_188046.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PAE2

.
ath-r.7
for
PAE2

.
ath-m.9
for
PAE2

.
ath-e.2
for
PAE2

.
ath-m.4.bio
for
PAE2

.
ath-m.4.hor
for
PAE2

.
ath-m.4.lig
for
PAE2

.
ath-m.4.str
for
PAE2

.
ath-m.4.tis
for
PAE2

.
ath-u.5
for
PAE1

.
gma-u.5
for
PAE1

.
gma-u.5
for
100799919

.
gma-u.5
for
100796147

.
vvi-u.5
for
100263432

.
ppo-u.5
for
7470748

.
ppo-u.5
for
18094673

.
mtr-u.5
for
25485590

.
sly-u.5
for
101247093

.
sly-u.5
for
101266742

.
osa-u.5
for
4350922

.
zma-u.5
for
100282220

.
zma-u.5
for
100283546

.


Ortholog ID: 3100
Species ath ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol PAE1 PAE2 PAE1 LOC100499756 LOC101266742 LOC101247093 LOC4350922 LOC100282220 LOC100283546 LOC103848506 LOC103832649 LOC100263432 LOC18094673 LOC7470748 LOC25485590 LOC123102779 LOC123110972 LOC123395874 LOC123448546 LOC107891756 LOC107897671 LOC106416418 LOC106360399 CHLRE_17g724350v5 LOC8080549 LOC8068293 LOC102583874 LOC102599627 LOC102620751 LOC100836191 LOC100825853 LOC107805979 LOC107806762
Function* 20S proteasome alpha subunit E1 20S proteasome alpha subunit E2 20S proteasome subunit uncharacterized LOC100499756 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5-like proteasome subunit alpha type 5 proteasome subunit alpha type 5 proteasome subunit alpha type-5-A proteasome subunit alpha type-5-A proteasome subunit alpha type-5-like proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5-like proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5-A proteasome subunit alpha type-5-A uncharacterized protein proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5 proteasome subunit alpha type-5-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 12
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 16
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 15
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra03060 Protein export 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 18
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 13
mtr00510 N-Glycan biosynthesis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 5
tae04145 Phagosome 5
tae03050 Proteasome 3
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 13
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna00100 Steroid biosynthesis 2
bna00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 12
sbi03440 Homologous recombination 2
sbi00071 Fatty acid degradation 2
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 9
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 7
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
bdi04016 MAPK signaling pathway - plant 2
bdi04070 Phosphatidylinositol signaling system 2
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 9
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 5
nta00330 Arginine and proline metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841822 820649 547598 100499756 101266742 101247093 4350922 100282220 100283546 103848506 103832649 100263432 18094673 7470748 25485590 123102779 123110972 123395874 123448546 107891756 107897671 106416418 106360399 5722748 8080549 8068293 102583874 102599627 102620751 100836191 100825853 107805979 107806762
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