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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G16565   threonyl and alanyl tRNA synthetase second additional domain-containing protein 
 ath-r.7   AT3G16565   threonyl and alanyl tRNA synthetase second additional domain-containing protein 
 ath-e.2   AT3G16565   threonyl and alanyl tRNA synthetase second additional domain-containing protein 
 bra-r.6   103869749   alanine--tRNA ligase 
 bna-r.1   106452199   alanine--tRNA ligase 
 bna-r.1   106452115   alanine--tRNA ligase 
 bna-r.1   125604406   alanine--tRNA ligase-like 
 ghi-r.1   107931493   alanine--tRNA ligase 
 ghi-r.1   107935157   alanine--tRNA ligase 
 cit-r.1   102620033   uncharacterized LOC102620033 
 gma-u.5   100781401   alanyl-tRNA editing protein AlaX-L-like 
 ppo-u.5   7474888   uncharacterized LOC7474888 
 mtr-u.5   11413170   alanine--tRNA ligase 
 osa-u.5   4326034   uncharacterized LOC4326034 
 zma-u.5   100216661   uncharacterized LOC100216661 
 tae-r.2   123059848   alanine--tRNA ligase 
 tae-r.2   123064341   alanine--tRNA ligase 
 tae-r.2   123076823   alanine--tRNA ligase 
 hvu-r.1   123442527   alanine--tRNA ligase 
 sbi-r.1   110433420   alanine--tRNA ligase 
 bdi-r.1   100840915   alanine--tRNA ligase 

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Top 50 coexpressed genes to AT3G16565 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G16565 (ath-u.5 coexpression data)

CoexMap"820906"


athAT3G16565 | Entrez gene ID : 820906      
Species ath bra bna ghi cit gma ppo mtr osa zma tae hvu sbi bdi cre sly sot nta vvi
Paralog 3 1 3 2 1 1 1 1 1 1 3 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006419 [list] [network] alanyl-tRNA aminoacylation  (1 genes)  IEA  
GO:0043039 [list] [network] tRNA aminoacylation  (20 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004813 [list] [network] alanine-tRNA ligase activity  (1 genes)  IEA  
GO:0004812 [list] [network] aminoacyl-tRNA ligase activity  (27 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (727 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
Protein NP_001078163.1 [sequence] [blastp]
NP_001325974.1 [sequence] [blastp]
NP_001325975.1 [sequence] [blastp]
NP_001325976.1 [sequence] [blastp]
NP_001325977.1 [sequence] [blastp]
NP_683570.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  extr 1,  vacu 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001078163.1)
nucl 5,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001325974.1)
nucl 6,  chlo 1,  cyto 1,  extr 1,  vacu 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001325975.1)
nucl 4,  cyto 4,  chlo 1  (predict for NP_001325976.1)
nucl 6,  chlo 1,  extr 1,  cyto 1,  vacu 1,  chlo_mito 1  (predict for NP_001325977.1)
nucl 6,  chlo 1,  cyto 1,  extr 1,  vacu 1,  chlo_mito 1  (predict for NP_683570.3)
Subcellular
localization
TargetP
other 7  (predict for NP_001078163.1)
other 7  (predict for NP_001325974.1)
other 7  (predict for NP_001325975.1)
other 7  (predict for NP_001325976.1)
other 7  (predict for NP_001325977.1)
other 7  (predict for NP_683570.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G16565
ath-r.7
for
AT3G16565
ath-e.2
for
AT3G16565
bra-r.6
for
103869749
bna-r.1
for
106452199
bna-r.1
for
106452115
bna-r.1
for
125604406
ghi-r.1
for
107931493
ghi-r.1
for
107935157
cit-r.1
for
102620033
gma-u.5
for
100781401
ppo-u.5
for
7474888
mtr-u.5
for
11413170
osa-u.5
for
4326034
zma-u.5
for
100216661
tae-r.2
for
123059848
tae-r.2
for
123064341
tae-r.2
for
123076823
hvu-r.1
for
123442527
sbi-r.1
for
110433420
bdi-r.1
for
100840915


Ortholog ID: 12429
Species ath bra bna bna bna ghi ghi cit gma ppo mtr osa zma tae tae tae hvu sbi bdi
Symbol AT3G16565 LOC103869749 LOC106452199 LOC106452115 LOC125604406 LOC107931493 LOC107935157 LOC102620033 LOC100781401 LOC7474888 LOC11413170 LOC4326034 LOC100216661 LOC123059848 LOC123064341 LOC123076823 LOC123442527 LOC110433420 LOC100840915
Function* threonyl and alanyl tRNA synthetase second additional domain-containing protein alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase-like alanine--tRNA ligase alanine--tRNA ligase uncharacterized LOC102620033 alanyl-tRNA editing protein AlaX-L-like uncharacterized LOC7474888 alanine--tRNA ligase uncharacterized LOC4326034 uncharacterized LOC100216661 alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 6
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna01230 Biosynthesis of amino acids 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 7
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna01230 Biosynthesis of amino acids 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 6
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna01230 Biosynthesis of amino acids 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04130 SNARE interactions in vesicular transport 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00511 Other glycan degradation 3
gma00230 Purine metabolism 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00941 Flavonoid biosynthesis 4
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
osa00052 Galactose metabolism 2
osa00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae00270 Cysteine and methionine metabolism 2
tae00350 Tyrosine metabolism 2
tae00360 Phenylalanine metabolism 2
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04142 Lysosome 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi04626 Plant-pathogen interaction 2
sbi02010 ABC transporters 2
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820906 103869749 106452199 106452115 125604406 107931493 107935157 102620033 100781401 7474888 11413170 4326034 100216661 123059848 123064341 123076823 123442527 110433420 100840915
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