ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT3G20170	ARM repeat superfamily protein
ath-r.7	AT3G20170	ARM repeat superfamily protein
ath-e.2	AT3G20170	ARM repeat superfamily protein
gma-u.5	100819735	vacuolar protein 8
vvi-u.5	100248730	U-box domain-containing protein 14
mtr-u.5	25489066	uncharacterized LOC25489066
sly-u.5	101268164	uncharacterized LOC101268164

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_188652.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, plas 4, cyto_plas 4

(predict for NP_188652.1)

Subcellular
localization
TargetP

other 7, chlo 5

(predict for NP_188652.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G20170 .	ath-r.7 for AT3G20170 .	ath-e.2 for AT3G20170 .	gma-u.5 for 100819735 .	vvi-u.5 for 100248730 .	mtr-u.5 for 25489066 .	sly-u.5 for 101268164 .

Ortholog ID: 12431

Species

ath

gma

sly

bra

vvi

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

ARM repeat superfamily protein

vacuolar protein 8

uncharacterized LOC101268164

U-box domain-containing protein 4

U-box domain-containing protein 12

U-box domain-containing protein 14

uncharacterized LOC25489066

outer dynein arm-docking complex subunit 2

U-box domain-containing protein 11

outer dynein arm-docking complex subunit 2-like

U-box domain-containing protein 4-like

armadillo repeat-containing protein 4

vacuolar protein 8

uncharacterized LOC107783048

uncharacterized LOC107784381

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra04136	Autophagy - other	2
bra04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00480	Glutathione metabolism	3
ghi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

821561

100819735

101268164

103859844

103869349

100248730

25489066

107886290

107927277

106389322

111214180

102594423

102619493

107783048

107784381

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G20170 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G20170 (ath-u.5 coexpression data)


Species	ath	gma	vvi	mtr	sly	tae	osa	hvu	zma	ghi	bdi	cit	bra	cre	sbi	ppo	bna	nta	sot
Paralog	3	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G20170 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G20170 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**