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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G48880   RNI-like superfamily protein 
 ath-r.7   AT3G48880   RNI-like superfamily protein 
 ath-m.9   AT3G48880   RNI-like superfamily protein 
 ath-e.2   AT3G48880   RNI-like superfamily protein 
 ath-m.4.bio   AT3G48880   RNI-like superfamily protein 
 ath-m.4.hor   AT3G48880   RNI-like superfamily protein 
 ath-m.4.lig   AT3G48880   RNI-like superfamily protein 
 ath-m.4.str   AT3G48880   RNI-like superfamily protein 
 ath-m.4.tis   AT3G48880   RNI-like superfamily protein 
 gma-u.5   100789355   F-box/LRR-repeat protein At3g48880 
 gma-u.5   100791249   F-box/LRR-repeat protein At3g48880 
 vvi-u.5   100248117   F-box/LRR-repeat protein At3g48880-like 
 ppo-u.5   7484395   F-box/LRR-repeat protein At3g48880 
 ppo-u.5   7454486   F-box/LRR-repeat protein At3g48880 
 mtr-u.5   25485083   F-box/LRR-repeat protein At3g48880 
 mtr-u.5   25485084   F-box/LRR-repeat protein At3g48880 
 sly-u.5   101247698   F-box/LRR-repeat protein At3g48880 
 sly-u.5   101247404   F-box/LRR-repeat protein At3g48880-like 
 sly-u.5   101246600   F-box/LRR-repeat protein At3g48880 
 osa-u.5   4349047   F-box/LRR-repeat protein At3g48880 
 zma-u.5   100273810   uncharacterized LOC100273810 

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Top 50 coexpressed genes to AT3G48880 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G48880 (ath-u.5 coexpression data)

CoexMap"824049"


athAT3G48880 | Entrez gene ID : 824049      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 2 2 3 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0050829 [list] [network] defense response to Gram-negative bacterium  (23 genes)  IMP  
GO CC
GO MF
GO:1905761 [list] [network] SCF ubiquitin ligase complex binding  (3 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001327846.1 [sequence] [blastp]
NP_190457.1 [sequence] [blastp]
NP_850671.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  cysk 1,  golg 1  (predict for NP_001327846.1)
cyto 5,  nucl 4,  cysk 1,  golg 1  (predict for NP_190457.1)
cyto 5,  nucl 4,  cysk 1,  golg 1  (predict for NP_850671.1)
Subcellular
localization
TargetP
other 9,  mito 3  (predict for NP_001327846.1)
other 9,  mito 3  (predict for NP_190457.1)
other 9,  mito 3  (predict for NP_850671.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G48880

.
ath-r.7
for
AT3G48880

.
ath-m.9
for
AT3G48880

.
ath-e.2
for
AT3G48880

.
ath-m.4.bio
for
AT3G48880

.
ath-m.4.hor
for
AT3G48880

.
ath-m.4.lig
for
AT3G48880

.
ath-m.4.str
for
AT3G48880

.
ath-m.4.tis
for
AT3G48880

.
gma-u.5
for
100789355

.
gma-u.5
for
100791249

.
vvi-u.5
for
100248117

.
ppo-u.5
for
7484395

.
ppo-u.5
for
7454486

.
mtr-u.5
for
25485083

.
mtr-u.5
for
25485084

.
sly-u.5
for
101247698

.
sly-u.5
for
101247404

.
sly-u.5
for
101246600

.
osa-u.5
for
4349047

.
zma-u.5
for
100273810

.


Ortholog ID: 5773
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol AT3G48880 LOC100789355 LOC100791249 LOC101246600 LOC101247404 LOC4349047 LOC100273810 LOC103873111 LOC103874908 LOC100248117 LOC7454486 LOC7484395 LOC25485083 LOC25485084 LOC123123262 LOC123047787 LOC123433348 LOC107936083 LOC107892071 LOC106368666 LOC106447520 LOC8067083 LOC102600704 LOC102597651 LOC102630101 LOC100828504 LOC107770472 LOC107823236
Function* RNI-like superfamily protein F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880-like F-box/LRR-repeat protein At3g48880 uncharacterized LOC100273810 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880-like F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880-like F-box/LRR-repeat protein At3g48880-like F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880 F-box/LRR-repeat protein At3g48880-like F-box/LRR-repeat protein At3g48880
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr03083 Polycomb repressive complex 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03082 ATP-dependent chromatin remodeling 2
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00513 Various types of N-glycan biosynthesis 4
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00513 Various types of N-glycan biosynthesis 4
nta00510 N-Glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824049 100789355 100791249 101246600 101247404 4349047 100273810 103873111 103874908 100248117 7454486 7484395 25485083 25485084 123123262 123047787 123433348 107936083 107892071 106368666 106447520 8067083 102600704 102597651 102630101 100828504 107770472 107823236
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