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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G58530   RNI-like superfamily protein 
 ath-r.7   AT3G58530   RNI-like superfamily protein 
 ath-m.9   AT3G58530   RNI-like superfamily protein 
 ath-e.2   AT3G58530   RNI-like superfamily protein 
 ath-m.4.bio   AT3G58530   RNI-like superfamily protein 
 ath-m.4.hor   AT3G58530   RNI-like superfamily protein 
 ath-m.4.lig   AT3G58530   RNI-like superfamily protein 
 ath-m.4.str   AT3G58530   RNI-like superfamily protein 
 ath-m.4.tis   AT3G58530   RNI-like superfamily protein 
 gma-u.5   100818866   F-box protein At3g58530 
 vvi-u.5   100243447   F-box protein At3g58530 
 ppo-u.5   7479508   F-box protein At3g58530 
 mtr-u.5   25483581   F-box protein At3g58530 
 sly-u.5   101251292   F-box protein At3g58530 
 osa-u.5   9267245   F-box protein At3g58530 
 zma-u.5   103626911   F-box protein At3g58530-like 

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Top 50 coexpressed genes to AT3G58530 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G58530 (ath-u.5 coexpression data)

CoexMap"825022"


athAT3G58530 | Entrez gene ID : 825022      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_567069.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1  (predict for NP_567069.1)
Subcellular
localization
TargetP
other 9  (predict for NP_567069.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G58530

.
ath-r.7
for
AT3G58530

.
ath-m.9
for
AT3G58530

.
ath-e.2
for
AT3G58530

.
ath-m.4.bio
for
AT3G58530

.
ath-m.4.hor
for
AT3G58530

.
ath-m.4.lig
for
AT3G58530

.
ath-m.4.str
for
AT3G58530

.
ath-m.4.tis
for
AT3G58530

.
gma-u.5
for
100818866

.
vvi-u.5
for
100243447

.
ppo-u.5
for
7479508

.
mtr-u.5
for
25483581

.
sly-u.5
for
101251292

.
osa-u.5
for
9267245

.
zma-u.5
for
103626911

.


Ortholog ID: 12661
Species ath gma sly osa zma bra vvi ppo mtr ghi ghi bna bna sbi cit bdi nta nta
Symbol AT3G58530 LOC100818866 LOC101251292 LOC9267245 LOC103626911 LOC103841731 LOC100243447 LOC7479508 LOC25483581 LOC107899211 LOC107948233 LOC106368276 LOC106403214 LOC8080408 LOC102614519 LOC100842046 LOC107773835 LOC107824559
Function* RNI-like superfamily protein F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530-like F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530 F-box protein At3g58530-like F-box protein At3g58530
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825022 100818866 101251292 9267245 103626911 103841731 100243447 7479508 25483581 107899211 107948233 106368276 106403214 8080408 102614519 100842046 107773835 107824559
The preparation time of this page was 1.6 [sec].