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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G59950   Peptidase family C54 protein 
 ath-r.7   AT3G59950   Peptidase family C54 protein 
 ath-m.9   AT3G59950   Peptidase family C54 protein 
 ath-e.2   AT3G59950   Peptidase family C54 protein 
 ath-m.4.bio   AT3G59950   Peptidase family C54 protein 
 ath-m.4.hor   AT3G59950   Peptidase family C54 protein 
 ath-m.4.lig   AT3G59950   Peptidase family C54 protein 
 ath-m.4.str   AT3G59950   Peptidase family C54 protein 
 ath-m.4.tis   AT3G59950   Peptidase family C54 protein 
 ath-u.5   AT2G44140   Peptidase family C54 protein 
 bra-r.6   103866769   cysteine protease ATG4a 
 bra-r.6   103862922   cysteine protease ATG4b 
 bra-r.6   103841848   cysteine protease ATG4b 
 bna-r.1   106445119   cysteine protease ATG4b 
 bna-r.1   106396820   cysteine protease ATG4b 
 bna-r.1   106396699   cysteine protease ATG4a-like 
 ghi-r.1   107930798   cysteine protease ATG4 
 ghi-r.1   107931271   cysteine protease ATG4 
 cit-r.1   102630051   cysteine protease ATG4 
 gma-u.5   100810317   cysteine protease ATG4 
 gma-u.5   100809664   cysteine protease ATG4 
 vvi-u.5   100255545   cysteine protease ATG4 
 ppo-u.5   7465597   cysteine protease ATG4 
 ppo-u.5   18106381   cysteine protease ATG4 
 mtr-u.5   11436743   cysteine protease ATG4 
 sly-u.5   101249673   cysteine protease ATG4 
 sot-r.1   102586842   cysteine protease ATG4-like 
 nta-r.1   107768603   cysteine protease ATG4-like 
 nta-r.1   107830682   cysteine protease ATG4 
 osa-u.5   4333022   cysteine protease ATG4A-like 
 osa-u.5   4337435   cysteine protease ATG4B-like 
 zma-u.5   103645750   cysteine protease ATG4B-like 
 zma-u.5   103645145   cysteine protease ATG4B 
 zma-u.5   100240691   uncharacterized LOC100240691 
 tae-r.2   123055258   cysteine protease ATG4B 
 tae-r.2   100415827   cysteine protease ATG4B 
 tae-r.2   100415828   cysteine protease ATG4B 
 hvu-r.1   123428451   cysteine protease ATG4B-like 
 sbi-r.1   110436280   cysteine protease ATG4B-like 
 bdi-r.1   100829360   cysteine protease ATG4B 
 cre-r.1   CHLRE_12g510100v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G59950 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G59950 (ath-u.5 coexpression data)

CoexMap"825165"


athAT3G59950 | Entrez gene ID : 825165      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 2 1 2 1 2 1 1 1 2 2 3 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04136 [list] [network] Autophagy - other (41 genes)
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004175 [list] [network] endopeptidase activity  (141 genes)  IDA  
Protein NP_001118859.1 [sequence] [blastp]
NP_001325932.1 [sequence] [blastp]
NP_001325933.1 [sequence] [blastp]
NP_191554.1 [sequence] [blastp]
NP_850722.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1,  nucl_plas 1  (predict for NP_001118859.1)
chlo 5,  chlo_mito 4,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001325932.1)
chlo 5,  nucl 3,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001325933.1)
chlo 4,  nucl 4,  chlo_mito 3,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_191554.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for NP_850722.3)
Subcellular
localization
TargetP
mito 5  (predict for NP_001118859.1)
chlo 9  (predict for NP_001325932.1)
mito 5  (predict for NP_001325933.1)
chlo 9  (predict for NP_191554.1)
chlo 9  (predict for NP_850722.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G59950
ath-r.7
for
AT3G59950
ath-m.9
for
AT3G59950
ath-e.2
for
AT3G59950
ath-m.4.bio
for
AT3G59950
ath-m.4.hor
for
AT3G59950
ath-m.4.lig
for
AT3G59950
ath-m.4.str
for
AT3G59950
ath-m.4.tis
for
AT3G59950
ath-u.5
for
AT2G44140
bra-r.6
for
103866769
bra-r.6
for
103862922
bra-r.6
for
103841848
bna-r.1
for
106445119
bna-r.1
for
106396820
bna-r.1
for
106396699
ghi-r.1
for
107930798
ghi-r.1
for
107931271
cit-r.1
for
102630051
gma-u.5
for
100810317
gma-u.5
for
100809664
vvi-u.5
for
100255545
ppo-u.5
for
7465597
ppo-u.5
for
18106381
mtr-u.5
for
11436743
sly-u.5
for
101249673
sot-r.1
for
102586842
nta-r.1
for
107768603
nta-r.1
for
107830682
osa-u.5
for
4333022
osa-u.5
for
4337435
zma-u.5
for
103645750
zma-u.5
for
103645145
zma-u.5
for
100240691
tae-r.2
for
123055258
tae-r.2
for
100415827
tae-r.2
for
100415828
hvu-r.1
for
123428451
sbi-r.1
for
110436280
bdi-r.1
for
100829360
cre-r.1
for
CHLRE_12g510100v5


Ortholog ID: 5976
Species ath ath bra bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma zma tae tae tae hvu sbi bdi cre
Symbol AT3G59950 AT2G44140 LOC103866769 LOC103862922 LOC103841848 LOC106445119 LOC106396699 LOC106396690 LOC107930798 LOC107931271 LOC102630051 LOC100810317 LOC100809664 LOC100255545 LOC7465597 LOC18106381 LOC11436743 LOC101249673 LOC102586842 LOC107768603 LOC107830682 LOC4333022 LOC4337435 LOC103645750 LOC103645145 LOC100240691 LOC123055258 LOC100415827 LOC100415828 LOC123428451 LOC110436280 LOC100829360 CHLRE_12g510100v5
Function* Peptidase family C54 protein Peptidase family C54 protein cysteine protease ATG4a cysteine protease ATG4b cysteine protease ATG4b cysteine protease ATG4b cysteine protease ATG4a-like cysteine protease ATG4a cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4 cysteine protease ATG4-like cysteine protease ATG4-like cysteine protease ATG4 cysteine protease ATG4A-like cysteine protease ATG4B-like cysteine protease ATG4B-like cysteine protease ATG4B uncharacterized LOC100240691 cysteine protease ATG4B cysteine protease ATG4B cysteine protease ATG4B cysteine protease ATG4B-like cysteine protease ATG4B-like cysteine protease ATG4B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra01200 Carbon metabolism 2
bra01210 2-Oxocarboxylic acid metabolism 2
bra00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 3
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 5
bna04070 Phosphatidylinositol signaling system 5
bna04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04712 Circadian rhythm - plant 2
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04120 Ubiquitin mediated proteolysis 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 2
osa00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae00410 beta-Alanine metabolism 3
tae00770 Pantothenate and CoA biosynthesis 3
tae00600 Sphingolipid metabolism 3
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae00410 beta-Alanine metabolism 3
tae00770 Pantothenate and CoA biosynthesis 3
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04136 Autophagy - other 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825165 819020 103866769 103862922 103841848 106445119 106396699 106396690 107930798 107931271 102630051 100810317 100809664 100255545 7465597 18106381 11436743 101249673 102586842 107768603 107830682 4333022 4337435 103645750 103645145 100240691 123055258 100415827 100415828 123428451 110436280 100829360 5716557
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