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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   MSH4   MUTS-like protein 4 
 ath-m.4.bio   MSH4   MUTS-like protein 4 
 ath-m.4.hor   MSH4   MUTS-like protein 4 
 ath-m.4.lig   MSH4   MUTS-like protein 4 
 ath-m.4.str   MSH4   MUTS-like protein 4 
 ath-m.4.tis   MSH4   MUTS-like protein 4 
 bra-r.6   103834012   DNA mismatch repair protein MSH4 
 bna-r.1   106381657   DNA mismatch repair protein MSH4 
 bna-r.1   106430357   DNA mismatch repair protein MSH4 
 ghi-r.1   107886066   DNA mismatch repair protein MSH4 
 ghi-r.1   107944387   DNA mismatch repair protein MSH4 
 cit-r.1   102623441   DNA mismatch repair protein MSH4 
 gma-u.5   100815919   DNA mismatch repair protein MSH4 
 mtr-u.5   11436948   DNA mismatch repair protein MSH4 
 sly-u.5   101263336   DNA mismatch repair protein MSH4 
 sot-r.1   102599967   DNA mismatch repair protein MSH4 
 nta-r.1   107802422   DNA mismatch repair protein MSH4 
 nta-r.1   107788296   DNA mismatch repair protein MSH4-like 
 osa-u.5   9266513   DNA mismatch repair protein MSH4 
 zma-u.5   103647676   DNA mismatch repair protein MSH4 
 tae-r.2   123052118   peroxisome biogenesis factor 10 
 tae-r.2   123187979   DNA mismatch repair protein MSH4 
 tae-r.2   123044238   DNA mismatch repair protein MSH4 
 hvu-r.1   123425351   DNA mismatch repair protein MSH4 
 bdi-r.1   100822001   DNA mismatch repair protein MSH4 
 cre-r.1   CHLRE_16g692550v5   uncharacterized protein 

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Top 50 coexpressed genes to MSH4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MSH4 (ath-m.9 coexpression data)

CoexMap"827450"


athMSH4 | Entrez gene ID : 827450      
Species ath bra bna ghi cit gma mtr sly sot nta osa zma tae hvu bdi cre sbi vvi ppo
Paralog 6 1 2 2 1 1 1 1 1 2 1 1 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010777 [list] [network] meiotic mismatch repair involved in reciprocal meiotic recombination  (2 genes)  IMP  
GO:0007129 [list] [network] homologous chromosome pairing at meiosis  (31 genes)  IGI IMP  
GO:0045143 [list] [network] homologous chromosome segregation  (35 genes)  IMP  
GO CC
GO:0043073 [list] [network] germ cell nucleus  (6 genes)  IDA  
GO:0000794 [list] [network] condensed nuclear chromosome  (16 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001327948.1 [sequence] [blastp]
NP_193469.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 9,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for NP_001327948.1)
plas 7,  E.R. 1,  nucl 1,  golg 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_193469.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001327948.1)
other 8  (predict for NP_193469.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
MSH4
ath-m.4.bio
for
MSH4
ath-m.4.hor
for
MSH4
ath-m.4.lig
for
MSH4
ath-m.4.str
for
MSH4
ath-m.4.tis
for
MSH4
bra-r.6
for
103834012
bna-r.1
for
106381657
bna-r.1
for
106430357
ghi-r.1
for
107886066
ghi-r.1
for
107944387
cit-r.1
for
102623441
gma-u.5
for
100815919
mtr-u.5
for
11436948
sly-u.5
for
101263336
sot-r.1
for
102599967
nta-r.1
for
107802422
nta-r.1
for
107788296
osa-u.5
for
9266513
zma-u.5
for
103647676
tae-r.2
for
123052118
tae-r.2
for
123187979
tae-r.2
for
123044238
hvu-r.1
for
123425351
bdi-r.1
for
100822001
cre-r.1
for
CHLRE_16g692550v5


Ortholog ID: 10192
Species bra bna bna ghi ghi cit gma mtr sly sot nta nta osa zma tae tae tae hvu bdi cre
Symbol LOC103834012 LOC106381657 LOC106430357 LOC107886066 LOC107944387 LOC102623441 LOC100815919 LOC11436948 LOC101263336 LOC102599967 LOC107802422 LOC107788296 LOC9266513 LOC103647676 LOC123052118 LOC123187979 LOC123044238 LOC123425351 LOC100822001 CHLRE_16g692550v5
Function* DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4-like DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 peroxisome biogenesis factor 10 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 DNA mismatch repair protein MSH4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi04144 Endocytosis 2
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi04144 Endocytosis 2
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
cit00561 Glycerolipid metabolism 2
cit00740 Riboflavin metabolism 2
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 2
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
nta00260 Glycine, serine and threonine metabolism 2
nta00270 Cysteine and methionine metabolism 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03040 Spliceosome 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103834012 106381657 106430357 107886066 107944387 102623441 100815919 11436948 101263336 102599967 107802422 107788296 9266513 103647676 123052118 123187979 123044238 123425351 100822001 5724848
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