ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-r.7	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-m.9	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-e.2	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.bio	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.hor	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.lig	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.str	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.tis	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-u.5	AT4G08690	Sec14p-like phosphatidylinositol transfer family protein
ath-u.5	AT1G22180	Sec14p-like phosphatidylinositol transfer family protein
ath-u.5	AT1G75170	Sec14p-like phosphatidylinositol transfer family protein
bra-r.6	103858491	phosphatidylinositol transfer protein 3
bra-r.6	103869072	phosphatidylinositol transfer protein 3
bra-r.6	103866906	phosphatidylinositol transfer protein 3
bna-r.1	106406226	phosphatidylinositol transfer protein 3
bna-r.1	106397854	phosphatidylinositol transfer protein 3-like
bna-r.1	106397527	phosphatidylinositol transfer protein 3
ghi-r.1	107923075	phosphatidylinositol transfer protein 3
ghi-r.1	107912007	phosphatidylinositol transfer protein 3
ghi-r.1	107909394	phosphatidylinositol transfer protein PDR16
cit-r.1	102631036	uncharacterized LOC102631036
cit-r.1	102616184	uncharacterized LOC102616184
cit-r.1	102625391	uncharacterized LOC102625391
gma-u.5	100800024	CRAL-TRIO domain-containing protein C23B6.04c-like
gma-u.5	100796911	phosphatidylinositol transfer protein 3-like
gma-u.5	100777065	phosphatidylinositol transfer protein 3
vvi-u.5	100262592	uncharacterized LOC100262592
vvi-u.5	100244435	uncharacterized LOC100244435
vvi-u.5	100250501	uncharacterized LOC100250501
ppo-u.5	7473174	uncharacterized LOC7473174
ppo-u.5	7474521	uncharacterized LOC7474521
ppo-u.5	7493854	uncharacterized LOC7493854
mtr-u.5	25482129	phosphatidylinositol transfer protein 3
mtr-u.5	11431996	phosphatidylinositol transfer protein 3
mtr-u.5	25489423	phosphatidylinositol transfer protein 3
sly-u.5	101245237	uncharacterized LOC101245237
sly-u.5	101247611	uncharacterized LOC101247611
sot-r.1	102577451	transporter-like protein
sot-r.1	102606331	random slug protein 5-like
nta-r.1	107766391	uncharacterized LOC107766391
nta-r.1	107784661	uncharacterized LOC107784661
osa-u.5	4326204	uncharacterized LOC4326204
osa-u.5	4330749	uncharacterized LOC4330749
osa-u.5	4333953	phosphatidylinositol transfer protein PDR17
zma-u.5	100383282	Sec14p-like phosphatidylinositol transfer family protein
zma-u.5	100279110	uncharacterized LOC100279110
zma-u.5	100276317	uncharacterized LOC100276317
tae-r.2	123069626	phosphatidylinositol transfer protein 3
tae-r.2	123090920	phosphatidylinositol transfer protein PDR17
tae-r.2	123087045	phosphatidylinositol transfer protein PDR17
hvu-r.1	123447620	phosphatidylinositol transfer protein PDR17-like
hvu-r.1	123447618	phosphatidylinositol transfer protein PDR17-like
sbi-r.1	8063351	random slug protein 5
sbi-r.1	8075696	random slug protein 5
sbi-r.1	8085831	random slug protein 5
bdi-r.1	104583877	phosphatidylinositol transfer protein 3
bdi-r.1	100834901	phosphatidylinositol transfer protein 3
bdi-r.1	100846868	phosphatidylinositol transfer protein PDR17
cre-r.1	CHLRE_07g352976v5	uncharacterized protein
cre-r.1	CHLRE_03g210961v5	uncharacterized protein
cre-r.1	CHLRE_12g503950v5	uncharacterized protein

Top 50 coexpressed genes to AT4G36640 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT4G36640 (ath-u.5 coexpression data)

CoexMap"829816"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus	(10367 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

Protein

NP_001078501.1 [sequence] [blastp]
NP_001329225.1 [sequence] [blastp]
NP_195382.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto_nucl 4, cyto 4	(predict for NP_001078501.1)
nucl 6, cyto_nucl 4, chlo 1, mito 1, plas 1, mito_plas 1	(predict for NP_001329225.1)
nucl 6, cyto_nucl 4, chlo 1, mito 1, plas 1, mito_plas 1	(predict for NP_195382.1)

Subcellular
localization
TargetP

other 5, mito 5	(predict for NP_001078501.1)
other 8, mito 4	(predict for NP_001329225.1)
other 8, mito 4	(predict for NP_195382.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G36640	ath-r.7 for AT4G36640	ath-m.9 for AT4G36640	ath-e.2 for AT4G36640	ath-m.4.bio for AT4G36640	ath-m.4.hor for AT4G36640	ath-m.4.lig for AT4G36640	ath-m.4.str for AT4G36640	ath-m.4.tis for AT4G36640	ath-u.5 for AT4G08690	ath-u.5 for AT1G22180	ath-u.5 for AT1G75170	bra-r.6 for 103858491	bra-r.6 for 103869072	bra-r.6 for 103866906	bna-r.1 for 106406226	bna-r.1 for 106397854	bna-r.1 for 106397527	ghi-r.1 for 107923075	ghi-r.1 for 107912007	ghi-r.1 for 107909394	cit-r.1 for 102631036	cit-r.1 for 102616184	cit-r.1 for 102625391	gma-u.5 for 100800024	gma-u.5 for 100796911	gma-u.5 for 100777065	vvi-u.5 for 100262592	vvi-u.5 for 100244435	vvi-u.5 for 100250501	ppo-u.5 for 7473174	ppo-u.5 for 7474521	ppo-u.5 for 7493854	mtr-u.5 for 25482129	mtr-u.5 for 11431996	mtr-u.5 for 25489423	sly-u.5 for 101245237	sly-u.5 for 101247611	sot-r.1 for 102577451	sot-r.1 for 102606331	nta-r.1 for 107766391	nta-r.1 for 107784661	osa-u.5 for 4326204	osa-u.5 for 4330749	osa-u.5 for 4333953	zma-u.5 for 100383282	zma-u.5 for 100279110	zma-u.5 for 100276317	tae-r.2 for 123069626	tae-r.2 for 123090920	tae-r.2 for 123087045	hvu-r.1 for 123447620	hvu-r.1 for 123447618	sbi-r.1 for 8063351	sbi-r.1 for 8075696	sbi-r.1 for 8085831	bdi-r.1 for 104583877	bdi-r.1 for 100834901	bdi-r.1 for 100846868	cre-r.1 for CHLRE_07g352976v5	cre-r.1 for CHLRE_03g210961v5	cre-r.1 for CHLRE_12g503950v5

Ortholog

Ortholog ID: 540

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Sec14p-like phosphatidylinositol transfer family protein

phosphatidylinositol transfer protein 3

phosphatidylinositol transfer protein 3-like

CRAL-TRIO domain-containing protein C23B6.04c

phosphatidylinositol transfer protein PDR16

phosphatidylinositol transfer protein 3

uncharacterized LOC102616184

uncharacterized LOC102625391

uncharacterized LOC102626911

CRAL-TRIO domain-containing protein C23B6.04c-like

phosphatidylinositol transfer protein 3

random slug protein 5-like

uncharacterized LOC100262592

uncharacterized LOC100250501

uncharacterized LOC100260491

uncharacterized LOC7473174

uncharacterized LOC7474521

uncharacterized LOC18099279

phosphatidylinositol transfer protein 3

uncharacterized LOC101245237

uncharacterized LOC101258514

transporter-like protein

random slug protein 5-like

uncharacterized LOC107789371

uncharacterized LOC107803654

uncharacterized LOC4326204

uncharacterized LOC4330749

phosphatidylinositol transfer protein PDR17

Sec14p-like phosphatidylinositol transfer family protein

uncharacterized LOC100279110

uncharacterized LOC100276317

phosphatidylinositol transfer protein 3

phosphatidylinositol transfer protein 3-like

random slug protein 5

phosphatidylinositol transfer protein 3

phosphatidylinositol transfer protein PDR17

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	3
ath00010	Glycolysis / Gluconeogenesis	2
ath01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	10
ath01230	Biosynthesis of amino acids	6
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
ath00030	Pentose phosphate pathway	3
ath01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra00020	Citrate cycle (TCA cycle)	2
bra01200	Carbon metabolism	2
bra01230	Biosynthesis of amino acids	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	6
bna04145	Phagosome	6
bna00270	Cysteine and methionine metabolism	4
bna00460	Cyanoamino acid metabolism	4
bna00920	Sulfur metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	6
ghi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00061	Fatty acid biosynthesis	4
ghi01040	Biosynthesis of unsaturated fatty acids	4
ghi01212	Fatty acid metabolism	4
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00510	N-Glycan biosynthesis	2
cit00513	Various types of N-glycan biosynthesis	2
cit04141	Protein processing in endoplasmic reticulum	2
cit00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma00062	Fatty acid elongation	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	4
mtr00620	Pyruvate metabolism	4
mtr00071	Fatty acid degradation	2
mtr00350	Tyrosine metabolism	2
mtr00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00941	Flavonoid biosynthesis	7
mtr04712	Circadian rhythm - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	3
mtr00030	Pentose phosphate pathway	3
mtr00051	Fructose and mannose metabolism	3
mtr00710	Carbon fixation by Calvin cycle	3
mtr01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	6
sot00280	Valine, leucine and isoleucine degradation	3
sot00650	Butanoate metabolism	3
sot00100	Steroid biosynthesis	3
sot00908	Zeatin biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00052	Galactose metabolism	2
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04141	Protein processing in endoplasmic reticulum	2
osa00020	Citrate cycle (TCA cycle)	2
osa00190	Oxidative phosphorylation	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04148	Efferocytosis	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	3
osa01200	Carbon metabolism	3
osa01230	Biosynthesis of amino acids	3
osa04075	Plant hormone signal transduction	2
osa00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	8
zma04145	Phagosome	7
zma04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	4
zma00280	Valine, leucine and isoleucine degradation	2
zma00650	Butanoate metabolism	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae04626	Plant-pathogen interaction	3
tae00010	Glycolysis / Gluconeogenesis	2
tae00020	Citrate cycle (TCA cycle)	2
tae00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	3
cre00270	Cysteine and methionine metabolism	2
cre01240	Biosynthesis of cofactors	2
cre00340	Histidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	3

Expression

Expression pattern

Entrez Gene ID^*

829816

826436

843854

103858491

103866906

106388526

106355241

106409480

107909394

107905044

107937577

102616184

102625391

102626911

100800024

100775995

100802091

100262592

100250501

100260491

7473174

7474521

18099279

25482129

11431996

25489423

101245237

101258514

102577451

102594629

107789371

107803654

4326204

4330749

4333953

100383282

100279110

100276317

123061034

123128348

123443458

8063351

8085831

8059979

104583877

100834901

100846868

66054215

5724960

5716438

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	3	3	3	3	2	2	2	3	3	3	2	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G36640 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G36640 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**